Gorilla gorilla gorilla (western lowland gorilla): 101147472
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Entry
101147472 CDS
T02442
Symbol
DDX39B
Name
(RefSeq) spliceosome RNA helicase DDX39B isoform X2
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
ggo
Gorilla gorilla gorilla (western lowland gorilla)
Pathway
ggo03013
Nucleocytoplasmic transport
ggo03015
mRNA surveillance pathway
ggo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ggo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101147472 (DDX39B)
09122 Translation
03013 Nucleocytoplasmic transport
101147472 (DDX39B)
03015 mRNA surveillance pathway
101147472 (DDX39B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ggo03019
]
101147472 (DDX39B)
03041 Spliceosome [BR:
ggo03041
]
101147472 (DDX39B)
Enzymes [BR:
ggo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
101147472 (DDX39B)
Messenger RNA biogenesis [BR:
ggo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
101147472 (DDX39B)
Spliceosome [BR:
ggo03041
]
Complex C
Other components
EJC/TREX
101147472 (DDX39B)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
101147472 (DDX39B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
101147472
NCBI-ProteinID:
XP_004043683
Ensembl:
ENSGGOG00000005989
UniProt:
G3QT53
LinkDB
All DBs
Position
5:complement(join(49133027..49133043,49133371..49133518,49133646..49133790,49133889..49133998,49135378..49135509,49137966..49138084,49139098..49139281,49141357..49141449,49141741..49141868,49142917..49143127))
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AA seq
428 aa
AA seq
DB search
MAENDVDNELLDYEDDEVETAAGGDGAEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAI
VDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMC
HTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALA
RNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCR
KFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRC
IALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAF
NYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDI
SSYIEQTR
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atggcagagaacgatgtggacaatgagctcttggactatgaagatgatgaggtggagaca
gcagctgggggagatggggctgaggcccctgccaagaaggatgtcaagggctcctatgtc
tccatccacagctctggctttcgtgacttcctgctcaagccagagttgctccgggccatt
gtcgactgtggctttgagcatccgtcagaagtccagcatgagtgcatccctcaggccatt
ctgggaatggatgtcctgtgccaggccaagtcgggcatgggaaagacagcagtgtttgtc
ttggccacactgcaacagctggagccagttactgggcaggtgtctgtgctggtgatgtgt
cacactcgggagttggcttttcagatcagcaaggaatatgagcgcttctctaaatacatg
cccaatgtcaaggttgctgttttttttggtggtctgtctatcaagaaggatgaagaggtg
ctgaagaagaactgcccgcatatcgtcgtggggactccaggccgtatcctagccctggct
cgaaataagagcctcaacctcaaacacattaaacactttattttggatgaatgtgataag
atgcttgaacagctcgacatgcgtcgggatgtccaggaaatttttcgcatgaccccccac
gagaagcaggtcatgatgttcagtgctaccttgagcaaagagatccgtccagtctgccgc
aagttcatgcaagatccaatggagatcttcgtggatgatgagacgaagttgacgctgcat
gggttgcagcagtactacgtgaaactgaaggacaacgagaagaaccggaagctctttgac
cttctggatgtccttgagttcaaccaggtggtgatctttgtgaagtctgtgcagcggtgc
attgccttggcccagctactagtggagcagaacttcccagccattgccatccaccggggg
atgccccaggaggagaggctttctcggtatcagcagtttaaagattttcaacgacgaatt
cttgtggctaccaacctatttggccgaggcatggacatcgagcgggtgaacattgctttt
aattatgacatgcctgaggattctgacacctacctgcatcgggtggccagagcaggccgg
tttggcaccaagggcttggctatcacatttgtgtccgatgagaatgatgccaagatcctc
aatgatgtgcaggatcgctttgaggtcaatattagtgagctgcctgatgagatagacatc
tcctcctacattgaacagacacggtag
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integrated database retrieval system
