KEGG T02442: 129527682

Gorilla gorilla gorilla (western lowland gorilla): 129527682

Entry

129527682         CDS       T02442

Symbol

EDC4

Name

(RefSeq) enhancer of mRNA-decapping protein 4 isoform X1

K12616

enhancer of mRNA-decapping protein 4

Organism

ggo Gorilla gorilla gorilla (western lowland gorilla)

Pathway

ggo03018

RNA degradation

Brite

KEGG Orthology (KO) [BR:ggo00001]
09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    129527682 (EDC4)
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ggo03019]
    129527682 (EDC4)
Messenger RNA biogenesis [BR:ggo03019]
Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     129527682 (EDC4)
  mRNA degradation factors
   5'-3' decay
    Decapping complex
     129527682 (EDC4)

SSDB

Motif

Pfam:

Ge1_WD40 EDC4_C WD40 WD40_WDHD1_1st Beta-prop_EDC4L DUF445 Beta-prop_TEP1_2nd WD40_Prp19 WD40_CDC20-Fz Beta-prop_HPS5 WDR55 EIF3I

Other DBs

NCBI-GeneID:

129527682

NCBI-ProteinID:

XP_055222154

LinkDB

Position

18:join(97100168..97100249,97102853..97103009,97103396..97103507,97103781..97103880,97104125..97104314,97104417..97104564,97104649..97104753,97105074..97105183,97105268..97105351,97105444..97105539,97105645..97105747,97105865..97106045,97106145..97106217,97106320..97106411,97106495..97106682,97106758..97106879,97106971..97107124,97107465..97107898,97107984..97108088,97108173..97108325,97108405..97108441,97108576..97109017,97109120..97109235,97109337..97109502,97109587..97109773,97109866..97110085,97110476..97110639,97110756..97111056)

AA seq 1473 aa
MASCASIDIEDATQHLRDILKLDRPAGGPSAESPRPSSAYNGDLNGLLVPDPLCSGDGTS
ANKTGLRTMPPINLQEKQVICLSGDDSSTCIGILAKEVEIVASSDSSISSKARGSNKVKI
QPVAKYDWEQKYYYGNLIAVSNSFLAYAIRAANNGSAMVRVISVSTSERTLLKGFTGSVA
DLAFAHLNSPQLACLDEAGNLFVWRLALVNGKIQEEILVHIRQPEGTPLNHFRRIIWCPF
IPEESEDCCEESSPTVALLHEDRAEVWDLDMLRSRHSTWPVDVSQIKQGFIVVKGHSTCL
SEGALSPDGTVLATASHDGYVKFWQIYIEGQDEPRCLHEWKPHDGRPLSCLLFCDNHKKQ
DPDVPFWRFLITGADQNRELKMWCTVSWTCLQTIRFSPDIFSSVSVPPSLKVCLDLSAEY
LILSDVQRKVLYVMELLQNQEEGHACFSSISEFLLTHPVLSFGIQVVSRCRLRHTEVLPA
EEENDSLGADGTHGAGAMESAAGVLIKLFCVHTKALQDVQIRFQPQLNPDVVAPLPTHTA
HEDFTFGESRPELGSEGLVSAAHGSQPDLRRIVELPAPADFLSLSSETKPKLMTPDAFMT
PSASLQQITASPSSSSSGSSSSSSSSSSSLTAVSAMSSTSAVDPSLTRPPEELTLSPKLQ
LDGSLTMSSSGSLQASPRGLLPGLLPAPADKLTPKGPGQVPTAASALSLELQEVEPLGLP
QASPSRTRSPDVISSASTALSQDIPEIASEALSRGFGSSAPEGLEPDSMASAASALHLLS
PRPRPGPELGPQLGLDGGPGDGDRHNTPSLLEAALTQEASTPDSQVWPTAPDITRETCST
LAESPRNGLQEKHKSLAFHRPPYHLLQQRDSQDASAEQSDHDDEVASLASASGGFGTKVP
APRLPAKDWKTKGSPRTSPKLKRKSKKDDGDAAMGSRLTEHQVAEPPEDWPALIWQQQRE
LAELRHSQEELLQRLCTQLEGLQSTVTGHVERALETRHEQERILETGSTTWHRDGGSILG
LGRSTRPAPGPFLSYGAERRLERALAEGQQRGGQLQEQLTQQLSQALSSAVAGRLERSIR
DEIKKTVPPCVSRSLEPMAGQLSNSVATKLTAVEGSMKENISKLLKSKNLTDAIARAAAD
TLQGPMQAAYREAFQSVVLPAFEKSCQAMFQQINDSFRLGTQEYLQQLESHMKSRKAREQ
EAREPVLAQLRGLVSTLQSATEQMAATVAGSVRAEVQHQLHVAVGSLQESILAQVQRIVK
GEVSVALKEQQAAVTSSIMQAMRSAAGTPVPSAHLDCQAQQAHILQLLQQGHLNQAFQQA
LTAADLNLVLYVCETVDPAQVFGQPPCPLSQPVLLSLIQQLASDLGTRTDLKLSPFCLHP
EGSLWASVPPGGAPVCWHPPVACPFPPIPSYLEEAVMHLDHSDPITRDHMGSVMAQVRQK
LFQFLQAEPHNSLGKAARRLSLMLHGLVTPSLP

NT seq 4422 nt +upstreamnt +downstreamnt
atggcctcctgcgcgagcatcgacatcgaggacgccacgcagcacctgcgggacatcctc
aagctggaccggcccgcgggcggccccagtgcagagagcccacggccatccagtgcctac
aatggggacctcaatggacttctggtcccagacccgctctgctcaggtgatggtacctca
gcaaacaagactggtcttcggaccatgccacccattaacctgcaagagaagcaggtcatc
tgtctctcaggagatgatagctccacctgcattgggattttggccaaggaggtggagatt
gtggctagcagtgactctagcatttcaagcaaggcccggggaagcaacaaggtgaaaatt
cagcctgtcgccaagtatgactgggaacagaagtactactatggcaacctgattgctgtg
tctaactccttcttggcctatgccattcgggctgccaacaatggctctgccatggtgcgg
gtgatcagcgtcagcacttcggagcggaccttgctcaaaggcttcacaggcagtgtggct
gatctggcttttgcgcatctcaactctccacagctggcctgcctggatgaggcaggcaac
ctgttcgtgtggcgcttggctctggttaatggcaaaattcaagaagagatcttggtccat
atccggcagccagagggcacgccactgaaccactttcgcaggatcatctggtgccccttc
atccctgaggagagcgaggactgctgcgaggagagcagcccgacagtggccctgctgcat
gaagaccgggctgaggtgtgggacctggacatgctccgctccaggcacagtacctggcct
gtggatgtcagccagatcaagcagggcttcattgtggtaaaaggtcatagcacgtgcctc
agtgaaggagccctctctcctgatgggactgtgctggctactgcgagccatgatggctat
gtcaagttctggcagatctacattgaggggcaagatgagccaaggtgtctgcacgagtgg
aaacctcatgatgggcggcccctctcctgcctcctgttctgtgacaaccataagaaacaa
gaccctgatgtccctttctggaggttccttattactggcgctgaccagaaccgagagtta
aagatgtggtgtacagtatcctggacctgcctgcagactattcgcttctccccagatatc
ttcagctcagtgagtgtgccccctagcctcaaggtttgcttggacctctcagcagaatac
ctgattctcagcgatgtgcaacggaaggtcctctatgtgatggagctgctgcaaaaccag
gaggagggccatgcctgcttcagctccatctcggagttcctgctcacccaccctgtgctg
agctttggtatccaggttgtgagtcgctgccggctacggcacactgaggtgctgcctgcc
gaagaggaaaatgacagcctgggtgctgatggtacccatggagccggtgccatggagtct
gcggccggtgtgctcatcaagctcttttgtgtgcatactaaggcactgcaagatgtgcag
atccgcttccagccacagctgaaccctgatgtggtggccccactgcccacccacactgcc
cacgaggactttacatttggagagtctcggcccgaactgggctctgagggcctggtgtca
gccgctcacggctcccagcctgacctccgacgaatcgtggagctgcctgcacccgccgac
ttcctcagtctgagcagtgagaccaagcccaagttgatgacacctgacgccttcatgaca
cctagcgcctccttgcagcagatcactgcctctcccagcagcagtagcagcggtagcagc
agcagcagcagcagtagcagcagctcccttacagctgtgtctgccatgagcagcacctca
gctgtggacccctccttgaccaggccacctgaggagctgaccttgagccccaagctgcag
ctggatggcagcctgacaatgagcagcagtggcagccttcaggcaagcccgcgtggcctc
ctgcctggcctgctcccagccccagctgacaaactgactcccaaggggccgggccaggtg
cctactgccgcctctgcactgtccctggagctgcaggaagtggagcccctggggctaccc
caagcctcccctagccgcactcgttcccctgatgtcatctcctcagcttccactgccctg
tcccaggacatccctgagattgcatctgaggccctgtcccgtggttttggctcctctgca
ccagagggcctcgagccagacagtatggcttcagccgcctcagcactgcacctgctgtcc
ccacggccccggccagggcccgagctcggcccccagcttgggcttgatggaggccctggg
gatggagatcggcataataccccctccctcctggaggcagccttgacccaggaggcctcg
actcctgacagtcaggtttggcccacagcacctgacattactcgtgagacctgcagcacc
ctggcagaaagccccaggaatggccttcaggaaaagcacaagagcctggccttccaccga
ccaccatatcacctgctgcagcaacgtgacagccaggatgccagtgctgagcaaagtgac
catgatgatgaggtggccagccttgcctctgcttcaggaggctttggcaccaaagttcct
gctccacggctgcctgccaaggactggaagaccaagggatcccctcgaacctcacccaag
ctcaagaggaaaagcaagaaggatgatggggatgcagccatgggatcccggctcacagag
caccaggtggcagagccccctgaggactggccagcactaatttggcaacagcagagagag
ctggcagagctgcggcacagccaagaagagctgctgcagcgtctgtgtacccaactcgaa
ggcctgcagagcacagtcacaggccacgtagaacgtgcccttgagacccggcacgagcag
gaacgtatccttgagactggtagcacaacatggcatagggacgggggcagcattcttggc
ctgggaaggagtacacgacctgctccaggcccgttccttagctatggcgcagagcggcgg
ctggagcgagcgctggctgaggggcagcagcggggagggcagctgcaggagcagctgaca
caacagttgtcccaagcactgtcttcagctgtagctgggcggctagagcgcagcatacgg
gatgagatcaagaagacagtccctccatgtgtctcaaggagtctggagcctatggcaggc
caactgagcaactcagtggctaccaagctcacagctgtggagggcagcatgaaagagaac
atctccaagctgctcaagtccaagaacttgactgatgccatcgcccgagcagctgcagac
acattacaagggccgatgcaggctgcctaccgggaagccttccagagtgtggtgctgccg
gcctttgagaagagctgccaggccatgttccagcaaatcaatgatagcttccggctgggg
acacaggaatacttgcagcagctagaaagccacatgaagagccggaaggcacgggaacag
gaggccagggagcctgtgctagcccagctgcggggcctggtcagcacactgcagagtgcc
actgagcagatggcagccaccgtggctggcagtgttcgtgctgaggtgcagcaccagctg
catgtggctgtgggcagcctgcaggagtccattttagcacaggtacagcgcatcgttaag
ggtgaggtgagcgtggcgctcaaggagcagcaggccgccgtcacctccagcatcatgcag
gccatgcgctcagctgctggcacacctgtcccctctgcccaccttgactgccaggcccag
caagcccatatcctgcagctgctgcagcagggccacctcaatcaggccttccagcaggcg
ctgacagctgctgacctgaacctggtgctgtatgtgtgtgaaactgtggacccagcccag
gtttttgggcagccaccctgcccgctctcccagcctgtgctcctttccctcatccagcag
ctggcatctgaccttggcactcgaactgacctcaagctcagtcctttctgccttcaccca
gagggttccctctgggcctcggtgccaccagggggcgctcccgtctgctggcacccacct
gtagcctgtcctttcccccccatccccagctacctggaagaggccgtgatgcacctggac
cacagtgaccccatcactcgggaccacatgggctctgttatggcccaggtgcgccaaaag
ctttttcagttcctgcaggctgagccacacaactcacttggcaaagcagcccggcgtctc
agcctcatgctgcatggcctcgtgacccccagcctcccttag

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