Gemmatimonas groenlandica: HKW67_04995
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Entry
HKW67_04995 CDS
T07783
Symbol
rny
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
ggr
Gemmatimonas groenlandica
Pathway
ggr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ggr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HKW67_04995 (rny)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ggr03019
]
HKW67_04995 (rny)
Messenger RNA biogenesis [BR:
ggr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HKW67_04995 (rny)
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Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_KhpA-B
KH_PNO1_2nd
KH_NusA_2nd
KH_2
Motif
Other DBs
NCBI-ProteinID:
QJR34917
UniProt:
A0A6M4IN89
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Position
1200069..1201655
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AA seq
528 aa
AA seq
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MGEIPAAALVGALGFVAAVVAYVVGRQSWRKVETTEQQRALVVAEEGAVRVIDEAKREAE
TLRRGAIVAGKEEVLQLRESHEQDVRQRRVELEREEKRVLEREAQLDRARESLESREQEV
QRRGSELGRRETVATSKEQDLDKLIADERRKLEQLAGLSADQAKAELIRRLEDEALADAA
SRLREIRESAKRNADREAKKIVALAVQRVAAETTAESTVSAVSLPNDEMKGRIIGREGRN
IRAFELATGVDVIIDDTPDTVVVSCFDPVRRETARLALEKLVSDGRIHPGRIEEVVAKAR
KEVEVAIIETGEQAAYDVGVAGLHPELIKLIGRMKWRTSYGQNILSHSKEVAWLAGMMAA
ELGLDVALAKRGALLHDIGKVLTHEHEGTHVQLGVEVATKYGENPLVVNCIAAHHDDVPH
ESEVSVLVQAGDSISGSRPGARREAFETYVKRLEGLEKIASSYRGVERVFAIQAGREIRV
VVTPEQVDDTRMTALSEEIARRIESELQYPGQIKVVVIRESRAVDFAR
NT seq
1587 nt
NT seq
+upstream
nt +downstream
nt
atgggcgagattcccgcagcggcgctagttggcgcccttgggtttgtcgcggctgtcgtc
gcgtacgttgtcggacgacagtcgtggcgtaaggtggagacgaccgaacaacagcgagcg
ctcgtcgtcgccgaagagggcgcggtgcgcgtcattgatgaggcgaaacgcgaagcggaa
acgctcaggcggggcgcgatcgtcgcaggtaaggaggaagtacttcagctccgggagtcg
cacgagcaggatgtgcggcaacgtcgcgtcgagctcgagcgcgaggagaagcgggtgctc
gagcgcgaagcccagctcgaccgtgctcgcgagtcactcgagagccgcgaacaggaagta
cagcggcggggatccgagctcgggcgacgagagacggtggccacgtcgaaggagcaggac
ctcgacaagctcatcgcggacgaacgtcgcaaactcgaacagttggcgggcctcagcgct
gaccaggcgaaggccgagctgattcgtcggcttgaagacgaagcgctggctgacgcagcg
agtcggctgcgcgagattcgcgagtcggccaagcgcaacgcggaccgggaggccaagaag
atcgtggcgctcgcggtgcaacgtgtcgctgccgaaacgacggccgagagcacggtgtcg
gccgtttcgctgccgaatgacgagatgaagggacgcatcatcggccgcgagggacggaac
atccgcgccttcgaactggcgaccggcgtggacgtgatcatcgatgacacgccggacacc
gtggtggtgtcctgcttcgatccggttcggcgcgaaacggcacgcctcgctctcgagaag
ctcgtgagcgacggccgcatccatccggggcgcatcgaagaagtggtcgcgaaggcgcgc
aaggaggtcgaagtcgcgatcatcgaaaccggtgaacaagccgcctacgacgtcggtgtg
gcgggattgcatcccgaactcatcaagctcatcggccgcatgaagtggcgtaccagctac
ggccagaacatcctgtcgcattcgaaagaagtcgcgtggctggccggcatgatggccgcc
gagctcgggctggatgtcgcgctcgccaagcgcggcgcgctgttgcacgacatcggcaaa
gtgctcacgcatgagcacgaaggcacgcacgtccagctcggcgtcgaagtcgccaccaag
tacggcgagaatccgttggtggtgaattgcattgcggcccaccacgacgacgtgccgcac
gagagtgaggtgtcggtgctcgtgcaggccggcgacagtatttccgggtcgcgccccggt
gcgcggcgcgaggctttcgagacctacgtgaagcggctggaaggactggagaagatcgcc
tcgagctatcgcggcgtggagcgggtgtttgcgatccaggccggccgagagatccgcgtc
gttgtcacgccggaacaggtggacgacacgcggatgaccgcgctctccgaagagattgcg
cgtcgcatcgagtccgagctccagtatccggggcagatcaaagtcgtggtcatccgagag
agccgggcggtggattttgcgcgctga
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