Gemmatimonas groenlandica: HKW67_05515
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Entry
HKW67_05515 CDS
T07783
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ggr
Gemmatimonas groenlandica
Pathway
ggr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ggr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HKW67_05515
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ggr03019
]
HKW67_05515
03400 DNA repair and recombination proteins [BR:
ggr03400
]
HKW67_05515
Enzymes [BR:
ggr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HKW67_05515
Messenger RNA biogenesis [BR:
ggr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HKW67_05515
DNA repair and recombination proteins [BR:
ggr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
HKW67_05515
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
Motif
Other DBs
NCBI-ProteinID:
QJR35008
UniProt:
A0A6M4IM93
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All DBs
Position
1322892..1324685
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AA seq
597 aa
AA seq
DB search
MPIARTTSAGYGTLELARVTLRETFGYPDFRPPQIRAVQSVVSGRDALLVLPTGGGKSLC
YQVPALVRNGLTVVISPLISLMKDQVDALQRKGVSAAFINSTLSVSEVADRMARARDGSL
KLLYLAPERLEAGRVLQQLVEVGVQLLAVDEAHCISEWGHDFRPSYRRIGLIRERLGTPQ
TVALTATATPDVRRDIVRQLALRDVEVVVAGFDRTNLTYYVTPVRTQPDKDRAAIRLLRT
FDAPAIVYAPTRKAVERVTSVLVRGRIRAVAYHAGLDDALRQRAQDAFMQERARVIVATS
AFGMGIDKPDVRLVVHHSMPGSLEAYYQEAGRAGRDGEPSTCVLLHAYPDRFTHEFFIGS
AHPERSVIERTWRMLRSLVDRHGLVAFTVDELAKRAPASLGERKVGAALRVLIKAGACKA
EAAPMGRVSVRLLASPERIIGELTGDRAFDREVLRALWRAVGSKLELGATIDLDRLSRGL
GGSMALVPVLERLAAQQFVTWTRTGAAVRLDPRAKRADWLPVEWTAIDRRRRSDLNRLDA
MQRYAQTRYCRRAFVLRYFGDPEVRSQCAACDRCLGTTEVLPPASTKQSDRGRSRPL
NT seq
1794 nt
NT seq
+upstream
nt +downstream
nt
atgccgatcgcacgcaccacatcagccggttacggcacgctggaactcgcccgcgtcacg
ctgcgtgagacgtttggctatccggatttccggccgccgcagatccgtgcggtgcagtcg
gtggtctccggtcgcgatgcgctgctcgtactcccgaccggcggtggcaagtcactctgc
tatcaggtgcccgcgctcgtccgaaacggactgacggtggtgatctcgccgctgatctcg
ctgatgaaggatcaggtcgatgcgctccagcgcaaaggcgtgtcggcggcgttcatcaat
agcacgctgagcgtgagcgaggtcgcggaccgtatggcgcgggcgcgcgacggctcgctc
aaattgctctatctcgcgcccgagcgactggaggccggccgcgtgctgcagcaactcgtg
gaggtcggcgtgcaactgctggccgtcgacgaagcgcactgcatcagcgaatggggacac
gacttccggccgagctatcggcgaatcggcctgattcgcgagcgactgggtacaccgcaa
accgttgccctcacagcaaccgccacacccgatgtccggagggacatcgtgcgtcaactc
gcgctccgtgacgtcgaggtggtcgtggccggtttcgatcgtactaatctcacgtattac
gtgacaccggtgcgcacgcagcccgataaggaccgagcagcgatccgtctgcttcgcacc
ttcgacgcgcccgcgatcgtgtacgcacccacgcgcaaggcggtggaacgcgtgacgtcg
gtcttggtgcgcggtcgaatccgcgccgtcgcctatcacgccggattggatgacgcgctg
cgccagcgcgcgcaggatgccttcatgcaggagcgcgcccgcgtgatcgtggccaccagt
gcgttcggtatgggcatcgacaagccggatgtccgcctggtcgttcatcactccatgccc
ggctctctcgaggcgtattatcaggaagcgggacgtgccggtcgcgacggcgagccgagt
acgtgcgtgttgctccacgcatatcccgatcgcttcacgcacgaattcttcatcggcagt
gcacacccggagcgatccgtcattgagcgcacatggcggatgctgcgatcgctcgtcgac
cggcacggacttgtcgcattcaccgttgacgagctggcgaagcgggcgccggcgtcacta
ggcgagcgcaaagtcggggcggcccttcgcgtactgatcaaagccggcgcctgcaaagcc
gaggcggcacctatgggtcgcgtctccgtccggctcctcgcatctccggaacggatcatc
ggcgagctcacgggcgaccgcgcgttcgatcgggaagtgctccgggcgctgtggcgtgcg
gtcggcagcaaactggagctcggtgcgaccattgacctcgaccggctatctcgagggctc
ggtggatcgatggcgctcgtccctgttttggagcggctggcagcgcagcagttcgtcacg
tggacgcgaacgggggcagctgtgcgcctcgatccgcgcgcgaagcgcgcggactggctg
ccggtcgagtggacggcgatcgatcggcggcgcagatccgatctgaaccgtctcgatgca
atgcagcgatatgcgcagacgcgctattgccgaagagcgttcgtcctgcgctatttcgga
gaccccgaagtgcgctcccagtgcgctgcctgcgatcgttgcttgggcaccactgaagtc
cttccaccggccagcacgaagcagtccgatcgtggccggtcccgcccgctctga
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