Gemmatimonas groenlandica: HKW67_05525
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Entry
HKW67_05525 CDS
T07783
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08301
ribonuclease G [EC:3.1.26.-]
Organism
ggr
Gemmatimonas groenlandica
Brite
KEGG Orthology (KO) [BR:
ggr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ggr03019
]
HKW67_05525
03009 Ribosome biogenesis [BR:
ggr03009
]
HKW67_05525
Messenger RNA biogenesis [BR:
ggr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HKW67_05525
Ribosome biogenesis [BR:
ggr03009
]
Prokaryotic type
rRNA processing factors
HKW67_05525
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
Nudix_hydro
DnaJ_CXXCXGXG
DUF7351
Motif
Other DBs
NCBI-ProteinID:
QJR35010
UniProt:
A0A6M4IK47
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Position
1326390..1327961
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AA seq
523 aa
AA seq
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MKREILVNATPRETRVAILEDGQLVELLVDRPDARRMVGDVYLGKVEAVLPGIQAAFVNI
GTEKSAFLHAADVVVEDAPVADDEDDDEDEAGEDAGGGSAGGGRRGRREVRPIQDLLKRG
QDILVQITKEPISTKGPRVTAQVSLAGRFLVYMPFASKVGVSRKIDERSERQRLRAMVSE
MLPDDVGGVIIRTVSEDATKEVFERELNTLINNWKRIKRKTQFTRAPALVHRETNVTRGL
VRDLFSAKVEGVTVDSRQVFNEITEYLTGIAPELVERVKLYEDTVPLFDKADIETEIRDI
FKRRCDLPSGGYLIIEPTEALVSIDVNSGRYTGKRDPEKTVFKTNTEAAREIARQLRLRD
VGGIIVCDFIDMETQGNRDKVIHELRTHLGRDRARTKAHAVSDLGLVEMTRQRVRQSHWQ
SMTESCPTCSGTGRVFTPETIVRRTERAVRRMSAEGRREPVILRLHPEVALHVLEQEHDF
VKRLEKLAGFPIELRDDPLLRPDEMKLVMRGAQRDVTQQYALA
NT seq
1572 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgagaaatcctggtgaacgcgacgccgcgcgagacgcgcgtcgctattctcgag
gacggccagttggtggagttgctggtggatcgacccgatgcgcgtcgcatggttggcgat
gtgtatctcgggaaggtcgaagccgtgctccccggtattcaggccgccttcgtgaacatc
ggcaccgaaaagtccgcattcctgcacgccgccgacgtggtggtggaggatgcgccggtg
gccgacgacgaagatgatgacgaggacgaggccggcgaggatgccggtggcgggagcgcc
ggcggtggtcgccgcggtcgccgcgaagtccgccccattcaggacctcctgaagcgcggc
caagacatcctcgtgcaaatcacaaaggaaccgatttcgaccaagggcccgcgtgtgacc
gcacaggtctctctcgccggtcggttcctggtgtacatgccgttcgcgtccaaggtcggc
gtcagccgaaagatcgacgagcgttccgagcgacagcgcctgcgggcgatggtctccgag
atgctgcccgatgatgtgggcggggtcatcatccgcaccgtctcggaagacgcgaccaag
gaagtgttcgagcgtgagctcaacaccctcatcaacaactggaagcggatcaagcggaaa
acgcagttcactcgggcgcccgcgctggtacaccgcgagacgaacgtgacccgcggtctc
gtgcgcgatctgttcagtgcgaaggtcgagggcgtgaccgtcgactcccgtcaggtcttc
aacgagatcacggagtatctcacgggaatcgcccccgagctcgtcgagcgcgtcaagctg
tacgaggatacggtgccgttgttcgacaaggcggatatcgaaacggaaatccgcgatatc
ttcaagcggcgctgtgacctgccgagtggcggctacctgatcatcgagccgaccgaggcg
ctcgtctcgatcgacgtgaattccggtcgctacacgggcaagcgtgaccccgagaagacg
gtgttcaagacgaacaccgaggcggcacgtgaaattgcccgtcagctccggttgcgcgac
gttggcggcatcatcgtctgtgatttcatcgatatggaaacgcaggggaatcgcgacaag
gtgattcacgagctgcgtacgcacctcggtcgagatcgcgcccgtaccaaggcgcatgcg
gtctccgacctgggcctggtggagatgacgcgccagcgcgtgcggcagagccactggcaa
agcatgaccgagtcgtgccctacctgcagcggaaccggtcgtgtgttcacgcccgaaacg
atcgtccggcggacggagcgggccgtgcgccgtatgtcggcggagggacgccgcgagccg
gtgatcctccggctccatccggaggtcgcccttcacgtgctcgagcaggaacacgacttc
gtgaagcgcttggagaagctggccggattcccgatcgagctgcgggacgatcctttgctc
cgaccggatgaaatgaagctcgttatgcggggcgcccagcgggacgtcacgcagcagtac
gccctggcctga
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