Gemmatimonas groenlandica: HKW67_11245
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Entry
HKW67_11245 CDS
T07783
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
ggr
Gemmatimonas groenlandica
Pathway
ggr03030
DNA replication
ggr03430
Mismatch repair
ggr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ggr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HKW67_11245 (dnaE)
03430 Mismatch repair
HKW67_11245 (dnaE)
03440 Homologous recombination
HKW67_11245 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ggr03032
]
HKW67_11245 (dnaE)
03400 DNA repair and recombination proteins [BR:
ggr03400
]
HKW67_11245 (dnaE)
Enzymes [BR:
ggr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HKW67_11245 (dnaE)
DNA replication proteins [BR:
ggr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
HKW67_11245 (dnaE)
DNA repair and recombination proteins [BR:
ggr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
HKW67_11245 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
PHP
DNA_pol3_finger
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
QJR36043
UniProt:
A0A6M4IMX6
LinkDB
All DBs
Position
2660661..2664164
Genome browser
AA seq
1167 aa
AA seq
DB search
MSFVHLHCHSEYSLLDGANRIDDLIKRAQHYEMPALAITDHGNMHAAWDFQEKARKAGVK
PIMGMEAYVAPGDRRTRGRPGPGQKPYYHLVLLARDLVGYKNLVKLSSLGYTEGFYTKPR
IDRELLAQYSEGLIVSSACLAGEVAGHLMDDRMEAAREAAAWYAELFKDRYYLEVQAHTS
EGQAKLNAKILSLGDELGLPVIATNDAHFLKHEDHDAHDVLLCIGLGKDRNDRDRMKYDD
GLYFKPPNEIRPFFPGREDVLTNTLAIADSVDVQFAKKYYVPSFPLPPGVETENEYLVRL
STDGAKERYGDPLPANVQERLDYELGVITKTGYAGYFLITADFIKAARDRGIPVGPGRGS
AAGSLVAYSTRITDVCPLEFDLLFERFLNPERVSMPDVDVDFCFERRGEVIEYVRQKYGK
DSVGQIVTFGTMKSRAAVKDVGRTLGFTPGETDALAKLIPNAPNFSLTVKEAIEQVPEVK
AFYQNEPRYKQLLDFAISLEGLSRHTGVHAAGVVIAPGPLDEFVPICTQASKGSGAGDDE
RVIVTQYDMNALEKAGMLKMDFLGLTTLTVISDTLASIKQRSGVSVVLEERGFTDEKTYQ
LLRAGRTGGVFQFESPLATDVLKRMRCDRFDDLVASNALLRPGPLDAGMHNVYIRRKRGE
EPTVYALPELEPILSNTYGVITYQEQVMRLAQVLAGISLAEADVLRKAVGKKDSELIKKE
LGKFVTKAVAKGYDPKIIDELSGQIETFGRYGFNKSHSVAYSVVAYHTAFLKAHHPAEFM
AALLSSNIGKTEEVIKYIAEAREMQIEVLAPDVNESGWRFTVVGDKRVRFGLGAIRNVGR
GAIDSLIAARNEGPFTSLYDLCSRVDLRVCNKRVFEALIAAGACDGLGGHRAQLLAALDH
AINEASLRQEEAAKGQVSLFGDLLGGDTEETSGSSNGGAPPPLPSVPVWSESERLTREKE
LLGFYISGHPLEPYRTECELFASSTVAQLGNWTGDAVTIGVVITAIKKQISKRSGAEFAR
LTVEDFSGSSEVLVFPEAWAVIAERVRPDVPLLLKGGYSRKDQGVENATFIVDTVTRFAE
VRANGELAVAIDLSRELDLAPGVMDDVRASVEAHEGSAPLELRWDDGTGRTIRFRSKSLT
VAASPAILSDLRALLGADRVRLVRAGS
NT seq
3504 nt
NT seq
+upstream
nt +downstream
nt
atgtcgttcgttcatctgcactgccactccgagtattcgctcctcgacggcgcgaatcgt
atcgatgatctgatcaaacgcgcacagcattacgaaatgcctgcgctggcgatcaccgat
cacggtaacatgcatgctgcctgggatttccaggagaaagcgcgcaaggcgggcgtgaag
cccatcatggggatggaagcgtatgtggcgccgggtgaccgccgcacacgcggacgcccg
gggccgggtcagaagccgtactatcacctggtcctgctagcccgtgatctcgttggctac
aagaatctggtcaagctgtcgtcgttggggtacaccgaaggcttctacacgaagccgcga
atcgaccgcgaattgctggcccagtactccgaggggctgattgtctcctcagcgtgtctg
gccggtgaagtggccggtcacctcatggacgaccgcatggaggcggcgcgtgaagccgcc
gcgtggtatgccgagctgttcaaggaccgctactacctcgaagtccaggcgcacaccagc
gaaggacaggccaagctcaacgccaagatcctgtcgctgggtgacgagctggggcttccc
gtcattgccacgaacgacgcgcacttcctgaagcacgaggatcacgacgcgcacgacgtg
ctgttgtgcatcggccttggcaaggatcgcaacgaccgcgatcgcatgaagtacgacgac
gggttgtacttcaagccgcccaacgagatccgcccgttcttcccgggccgcgaagatgtg
ctcacgaatacgctggccatcgcggattcggtagacgtgcagttcgcgaagaagtactac
gtgccgtcgttcccgctgcctcccggcgtcgagaccgagaacgagtacctcgtgcgcctc
tccaccgatggcgcgaaggaacggtacggcgatccgctgccggccaacgtgcaggagcgc
ctcgactacgaactcggcgtcatcacgaagacgggctacgccggctacttcctgatcacc
gccgacttcatcaaggcggcgcgtgaccgcggcatcccggtgggaccgggacgaggctcg
gcggccggatcgctcgtggcctattcgacacgcattaccgacgtctgtccgctcgaattc
gacctgctcttcgaacgcttcctgaatcccgaacgcgtctcgatgcccgacgtggacgtc
gacttctgtttcgagcgacgcggcgaagtgatcgagtacgtgcggcagaagtacggcaag
gattcggtcgggcagatcgtcacgttcgggacgatgaagtcgcgcgccgccgtgaaagac
gtagggcgcaccctcggcttcacgcccggcgaaacggacgcgctggcgaagctgattccg
aacgcgccgaacttttcgctgaccgtgaaggaagcgatcgagcaggtgccggaggtgaag
gcgttctaccagaacgaaccacgctacaagcagctgctcgactttgcgatttcgctggaa
ggcctctcgcgacacaccggcgtgcatgcggccggcgtggtgatcgcgccgggcccactc
gatgaattcgtgccgatctgcacgcaggcatcgaagggttccggcgccggcgacgacgag
cgggtgatcgtgacgcagtacgacatgaacgcgctggaaaaggcgggcatgctcaagatg
gacttcctcgggcttaccacgctgacggtgatcagcgatacactggccagcatcaagcag
cgcagtggcgtgagtgtcgtgcttgaagagcgtggcttcaccgacgagaaaacgtatcag
ttgctgcgcgccggtcgcaccggcggcgtgtttcagttcgaatcgccgctcgccaccgac
gtgctcaagcgcatgcgctgcgaccgcttcgacgacttggtggcgtcgaacgccctgctg
cgcccgggtccgctcgatgccggcatgcacaacgtgtacatccggcgaaagcgcggcgaa
gagcccacggtgtacgcgctgcccgagctggaaccgattctctcgaacacctacggcgtc
atcacctatcaggagcaggtgatgcgtctggcgcaggtgctcgcgggcatctcgctggcc
gaagcggacgtgctgcgaaaggccgtaggtaagaaggactccgagctgatcaagaaggag
ctcggcaagttcgtcacgaaggccgtcgcgaagggctacgacccgaagatcatcgacgag
ctctcaggccagatcgaaacgttcggccgctacggcttcaacaagtcgcactcggtggcg
tactcggtggtcgcgtaccacacggccttcctgaaggcgcatcacccggccgagttcatg
gccgcgttgttgtcgtcgaacatcgggaagaccgaagaagtcatcaagtacatcgccgaa
gcgcgcgaaatgcagatcgaggtgctcgcgcccgacgtcaacgagtcgggctggcgcttc
acggtggtgggggacaagcgagtgcgcttcggtctcggcgccatccggaacgtgggccgc
ggcgcgatcgactcgctgatcgcggcgagaaatgaaggtccgttcacgtcactgtacgat
ctctgctcgcgggttgatcttcgcgtctgcaacaagcgggtgttcgaagcgctgatcgcg
gcgggcgcatgcgatggattgggcggacaccgggcgcagctgttggcggcactcgaccac
gccatcaacgaggcgtcgcttcggcaggaagaggccgccaagggacaggtctctctcttc
ggcgatctgctgggtggtgacactgaagagacgtcgggatcgagcaatggcggcgcaccg
ccaccgctcccgtcggtcccggtgtggagcgaaagcgagcggctcacgcgcgagaaagag
ctgctgggattctacatttccggtcatccgctcgagccgtaccgaacagagtgcgaactc
ttcgccagcagcacggtggcgcagttgggcaactggacgggtgacgcggtcacgatcggt
gtggtgatcacggcgatcaagaagcagatttccaaacggtcgggcgcggagttcgcccgg
ttgacagtagaggatttttccggatcttccgaagtgctggtcttcccggaggcgtgggcg
gtgatcgccgaacgtgtccggcccgatgtaccgctgctgctcaagggtggttattcgcgg
aaggatcagggcgtcgagaatgccacgttcatcgtcgacacggtcacgcgcttcgctgaa
gtgcgggccaacggtgagctggccgttgcaatcgacctgagtcgggagctggatctggct
cccggtgtgatggacgacgtgcgggcgagtgtcgaggcacacgaaggctcggctccgctc
gaactgcggtgggacgatggaaccggacgaaccattcgcttccggtcgaaatcgcttacc
gtggcggcgtcgcccgccatcttatccgatcttcgcgcgctgctcggcgctgatcgtgtg
cgcctcgtgcgtgccggcagctaa
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