Gemmatimonas groenlandica: HKW67_16425
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Entry
HKW67_16425 CDS
T07783
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
ggr
Gemmatimonas groenlandica
Brite
KEGG Orthology (KO) [BR:
ggr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ggr03019
]
HKW67_16425 (hrpB)
Enzymes [BR:
ggr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
HKW67_16425 (hrpB)
Messenger RNA biogenesis [BR:
ggr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
HKW67_16425 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
HA2_N
CON_HrpB
ResIII
Flavi_DEAD
AAA_30
Motif
Other DBs
NCBI-ProteinID:
QJR38268
UniProt:
A0A6M4IVS7
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All DBs
Position
3853392..3855887
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AA seq
831 aa
AA seq
DB search
MAARVVAVLEAPPGAGKTTRVPLALMHEPWLAGTKVVMLEPRRLAARAAASYMASILGEE
VGQTVGYRVRGESRISKRTRIEVVTEGVLARMLSSDAALEDIGLVIFDEFHERSLHADLG
LALVLEAQRHLRDELRVLVMSATLDGVAVSALLADDGGPAPVLRSEGRMFPIETHYRAPR
RDERIEATTARVIREALDATEDDVLVFLPGAGEQRRVAERLTGDTMSGVRVHTLHGGMPL
AEQDAALAPARVGTRKVVLSTSVAETSLTVAGVRVVIDCGLSRVPRYDASAGLTRLHTVR
VSRASADQRRGRAGRTAPGVSYRLWDQHEDHTLLPSTRPEIVDADLSSLALELADAGISD
PTTLRWLDVPRAGPFSQARGLLAQLGALDDTGRITPHGRRMAALPLQPRLAHLAIVAAER
GALPLGAAIAALLEERDIVRYDGLPPQSDMRLRTELLRRDGAASAAGVAVDRDGVRRVRQ
TADDLARRTAGGGSNVVRSSGSWDDADTGSLLALAYPDRVAQRRSGAEPRYLLRNGSGAV
LAKHDALYDAPYLAIADLEGTSPEARIVRAAPITLEELREDFGDQFERVQLVEWDERTKT
VRARKRTMLGAMVIDEVVWSDAEPSALLQAVLDAIRAQLARSGVEALPLSQAASRLRERM
AFVRAHDESWPDVSVAALSASLEDWAGPYLDGVRTWAQLASVDWHEALQSLMPWPQRSAL
ERLAPTHIDVPSGSRIALDYSDPMAPVLAVKLQEVFGWSTTPMVMDGRVSLTLQLLSPAQ
RPVQVTRDLAGFWRSSYFEVRKELRGRYPRHPWPEDPLTAEATRRAKPRGT
NT seq
2496 nt
NT seq
+upstream
nt +downstream
nt
atggccgcgcgtgtggtggcggtgctcgaagcgccgccgggtgcgggcaagaccacgcgg
gtccctctcgcgctgatgcatgagccgtggctggccggcacgaaggtggtgatgctcgag
ccacggcgactcgcggcccgcgcggccgcgtcgtacatggcgtcgatactcggcgaagag
gtagggcagacggtggggtaccgtgtgcgcggagagtcgcgcatctcgaagcgtacgcgc
atcgaagtcgttaccgaaggcgtattggcccgcatgctgagcagcgacgcagcgctcgag
gatatcggactcgtgatcttcgacgaatttcacgagcggtcgctgcacgccgacctgggg
ctggcgctggtgctggaagcgcagcgtcatctgcgtgacgagctgcgcgtgctggtgatg
tcggccacgctggatggggtggcggtgtcggcgctgttggccgacgacggcggaccggcc
cccgtgttgcgcagcgaaggacgcatgttccccatcgagacgcactatcgcgcgccgcgt
cgtgatgaacgcatcgaggccacgacggcgcgggtgatacgcgaagcactcgatgccacc
gaggacgatgtgctggtgttcctgccgggtgcgggtgagcagcggcgcgtggccgagcgt
ctcaccggcgacacgatgtcgggggtgcgcgtacacacgttgcatggcggcatgccgttg
gctgagcaggatgcggcgctggcaccggcgcgtgtgggtacgcgaaaggtcgtgctgagt
acgagtgtggcggaaacgagtcttaccgtcgcgggcgtgcgcgtggtgatcgactgcggc
ttgtcgcgcgtgccgcgctacgatgcatcggcggggctcacgcggctgcacacggtacgc
gtgagtcgcgcgtcggccgatcagcgtcgtggtcgtgcgggccgtacggccccgggtgtg
agctatcggctgtgggatcagcacgaggatcacacgctgttgccgagtacgcggccggag
attgtggatgcggatttgtcgtcgttggcgctggagctggccgacgcgggcatcagcgat
ccgacgacactacgatggctcgacgtgccgcgggcggggccgttctcgcaggcgcgcggg
ctgttggcgcagctcggtgcgctcgacgacacggggcgtatcacaccacacggccgtcgc
atggcggcgctgccgttgcagccgcggttggcgcacttggcaattgtcgcggcggaacgt
ggtgccttgccactcggtgcggcgatcgcggcgttgctggaggagcgcgacatcgtgcgc
tacgacgggttgccgccgcagtcggacatgcgattgcgcacggagctgctgcggcgcgat
ggtgcggcgagtgccgcgggggtggcggtcgatcgcgatggcgtgcgtcgcgtgcgacag
acggccgacgacctggcgcggcgcacggcgggcggtggatcgaacgtggtgcgatcgagc
ggatcatgggatgacgcggacacgggttcgctgctggcgttggcgtatcccgaccgcgtg
gcgcaacgtcgcagcggggccgagccgcggtatctgctgcgcaacggcagtggggcggtg
ctggcgaaacacgatgcactgtacgatgcgccgtatctggcgatcgcggacctcgagggt
acgtcgccggaagcgcgcatcgtgcgggcggcgccgatcacgctggaggagctacgcgag
gatttcggcgaccagttcgagcgcgtgcagctggtggagtgggatgagcgcaccaagacc
gtgcgcgcgcgcaagcgtacgatgctgggtgcgatggtgatagacgaggtggtgtggagt
gacgccgaaccttctgcgctgctgcaggcggtgctagacgcgattcgcgcccagctcgca
cgcagtggggtcgaggcgttgcccttgtcacaggccgcgtcccgactgcgcgagcggatg
gcgttcgtgcgcgcgcacgacgagagctggcccgatgtgtcggtggccgcgttgtcggcg
tcgctggaagactgggcagggccgtacctcgacggcgtgcgcacctgggcgcagctggcg
tcggtggactggcacgaggcgctgcagtcgctgatgccatggccgcagcggtcggcgctg
gagcggttggcgccgacgcacatcgacgtgcccagtgggtcgcggatcgcgctggactac
agcgacccgatggccccggtgctggcggtgaagctgcaggaagtgttcgggtggagtacg
acgccgatggtgatggatggccgcgtgtcgctcacgctgcagctgctgtcgccggcccag
cgaccggtgcaggtgacgcgcgacctcgcgggattctggcgcagctcgtacttcgaggtg
cggaaggagctgcgcgggcgatatcctcggcacccgtggccggaagatccgctcaccgcc
gaggcgacgcggagagcgaaaccgaggggcacgtga
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