Gemmatimonas groenlandica: HKW67_16755
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Entry
HKW67_16755 CDS
T07783
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ggr
Gemmatimonas groenlandica
Pathway
ggr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ggr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HKW67_16755
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ggr03019
]
HKW67_16755
Enzymes [BR:
ggr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HKW67_16755
Messenger RNA biogenesis [BR:
ggr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HKW67_16755
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Flavi_DEAD
UvrD-helicase
P-loop_SecA
ELYS
Motif
Other DBs
NCBI-ProteinID:
QJR37049
UniProt:
A0A6M4ITJ5
LinkDB
All DBs
Position
3936587..3938116
Genome browser
AA seq
509 aa
AA seq
DB search
MTSTPSFSSLQLHPSLQKGLKELGFARPTPIQAEAIPPALEGRDVLACAMTGSGKTYAFL
LPILHHIMEKPRGITRALVITPTRELAAQIVESLNDVTVHTPLTGAAVFGGVGMGPQEHA
FRSGADVIVATPGRLLDHFRMPYAKLEHLEYLVLDEADRMLDMGFLPEIKKVLRHLPQKK
RQTLFFSATMPAPIAALTKDLLTNPFTLNLQRQSAPAVGITQAVYPVAQDLKSGLLVALL
KRGDMPQALVFTRTKHRANRLAAQLVAAGIKAERIHGNRSQAQRTQALAGFKDGEYQVLV
ATDIAARGIDVEALGHVVNFDVPLAAEDYIHRVGRTARAEATGEAFTFVSPDEEGDLKQI
ERAIKKTLPRVTVPDFDYSAKPQTKLEVPLAERIAEIRKKKAEDRARAAAKVERRSAAQS
GGARPAAPSGGRPAAPARKTSESRGPSAGSRGPSSGGAGGAGGGAAKSGAAGRVRRGPHR
GQGGSGGSGNSGGGNSGGSSRGGGDSPYA
NT seq
1530 nt
NT seq
+upstream
nt +downstream
nt
gtgacctcaacgccgtcgttttcttcgctgcaactgcatccgagcctccagaagggcctc
aaggagctcggttttgcccgtcccaccccgattcaggccgaagcgattccgccggctctg
gaggggcgtgacgtcctcgcctgcgcgatgacgggcagcggcaagacgtatgcgttcctg
ctcccgattctccatcacatcatggagaagccgcgcgggatcacgcgggcgctggtgatc
acgcccacgcgtgaactggcggcgcagatcgtcgaaagcctgaacgacgtgaccgtgcac
acgccgctcactggcgccgcggtgttcggtggtgtgggcatgggaccgcaggaacacgcg
tttcgcagcggtgccgatgtgatcgtggccacaccgggacgcttgctcgatcacttccgc
atgccgtacgcaaagctcgagcatctcgagtacctggtactcgacgaagccgatcgcatg
ctcgacatgggcttcctgcccgagatcaagaaagtgctgcgtcatctgccgcagaagaag
cgccagacgctgttcttcagtgccacgatgccggcgccgatcgccgcgctcacgaaggat
ctgctcaccaatccgttcacgctcaacctgcagcgtcagtcggctcccgccgtcggcatt
acgcaggccgtgtatcccgtggcgcaggatctcaagagcggtctgctcgtcgcgctgctc
aagcgcggtgacatgccgcaggcgctggtgttcacgcgcacgaagcaccgcgcgaaccgc
ctggcggcgcaactggtggccgccggcatcaaggccgagcgcattcacggcaaccggtcg
caggcgcagcgtacgcaggcgctcgccggattcaaggacggcgagtatcaggtgctggtc
gccaccgacatcgccgcccgtggtatcgacgtggaagccctgggtcacgtggtgaacttc
gacgtgccgttggccgccgaggactatatccaccgcgtgggtcgtacggcgcgtgccgaa
gcgacgggtgaagcgttcacgttcgtgtcgcccgatgaagaaggggatctcaagcagatt
gagcgcgcgatcaagaagacgttgccgcgcgtgacggtacccgatttcgactacagcgcc
aagccgcagaccaagctcgaagtgccgttggccgagcgcatcgcggagatccgaaagaag
aaggcggaagaccgcgcgcgtgccgctgccaaggtggagcgtcgcagcgccgcgcagtcg
ggcggtgcccgtccggcggcaccgtcgggtggccgtccagcggctcccgcccggaagacg
agtgaatcgcgcggaccgtctgccggttcacgcggtccgtcgagtggtggcgctggtggt
gcaggcggtggtgccgcgaagagtggcgcggcgggccgtgtccgtcgtggaccgcatcgc
ggtcaaggcggcagcggtggaagcggcaacagtggtggcggcaacagtggcggctcctcg
cgcggcggcggagacagcccgtacgcgtga
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