Gemmatimonas groenlandica: HKW67_18705
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Entry
HKW67_18705 CDS
T07783
Name
(GenBank) UvrD-helicase domain-containing protein
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
ggr
Gemmatimonas groenlandica
Pathway
ggr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ggr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
HKW67_18705
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ggr03400
]
HKW67_18705
Enzymes [BR:
ggr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
HKW67_18705
DNA repair and recombination proteins [BR:
ggr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
HKW67_18705
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
Viral_helicase1
AAA_30
AAA_25
AAA_11
nSTAND_NTPase5
AAA_22
ObcA_N
DEAD
ResIII
Motif
Other DBs
NCBI-ProteinID:
QJR37393
UniProt:
A0A6M4IRK8
LinkDB
All DBs
Position
4369247..4372423
Genome browser
AA seq
1058 aa
AA seq
DB search
MMPFNALRVALEPGITLVEASAGTGKTFAITRLVLRLLLERKVEHLGQVLVVTFTEKATQ
ELIGRIRAVLRDADRVWSDTPPPRDAGNDDLFVLRELHGSAGAPIVRAALGALDELGVST
IHGFCHRVLSESALESRVHFGGTFLEDDTEILQRLTQDWLRRRVLHDPEVAALISDDGDD
PLAWIRNLVRPYLRHPRTTIDAAPEFAPQLLKDFVLTVAKAFEQEKQARHLMGFDDLLRR
LHDILVAEGSGGLLASRIRERFRVALIDEFQDTDPTQFPIFSMAFSGSPLFLIGDPKQSI
FAFRNADVHAYLKAAANIERRYTLLTNFRSTDAMVRGVTQLFRNNREPFACSPDLIGVPE
VTAANQVRIPEAIADDGGHALEWMWVGEMHNTSKNSIAKEQGASLAILAVTVEMQRLMAN
GLGAAQMAVLVRTNAEAQEIKMSLDAAGIPCVVGANQDVLASDEADELVRLAEAIATPRD
GAAVRAAMATRLWGCDAVAVADTLRNDGNGAWNGVLDRLVRARTMWLRHGGATALAWLMN
ECGATARLLSLVDGDRRVTNVRHVLEILQEADAVSALTPDAVLGWVASERGSAITPERRE
MRLESDADAVQILTIHKAKGLQWPVVFCPTLWRTKSFAPKALDVPYSLTPLDDGMVLDIG
SPSQALRSEQKALEQLGEDLRLTYVALTRAESRCYVTWGTFSDAAASPLGWLIQGTGDTV
EREPIDTLIAASVGTMGIADVVLEAPSTRSPAPAKPPERRAALTFATAPGQLAIWRSSSF
TVLTRNVSHVDSRDVDDILQPDEARRTAMHVAGFRGVPAGADIGNVLHGLFEHTDFTNPD
ATTDAAVQDALRAYGVTVPRDGRWTPTHIREMIDTVCRAEIPDAGFALSAVPTAATLREW
RFAMPVRDFSMAAVASALETQGSDHAREYAPMLRRLRDDQFRGYLTGSIDLAFEHAGRWH
ILDWKSNWLGANDADYTPAALGHAMHAAHYTLQYHVYLVALHRHLRARQAGYNARNHWGQ
VTYAFLRGIAATGHDGWFTDAPTPELLHALDRAFGGTP
NT seq
3177 nt
NT seq
+upstream
nt +downstream
nt
atgatgcctttcaacgcgctgcgtgtggcgctggagcccggcatcacgctcgtggaagcc
agcgctggcacgggaaagacgttcgcgatcacccgactcgtgctgcggctgctcctcgaa
cgcaaggtggagcatctcggacaggttctcgtggtcacgttcaccgagaaggcgacccag
gaactgatcggccgcattcgtgcggtgttgcgcgatgccgatcgcgtctggtccgatacg
ccgccgccgcgcgacgccggcaacgacgacctgttcgtcttgcgagagctgcacggaagc
gccggtgcgcccattgtacgcgccgctctcggtgcgctcgacgagctcggcgtgtccacc
attcacggcttttgtcaccgcgtgctctccgagagcgcgttggaaagtcgcgtacatttc
ggcggtacgttcctcgaagacgacaccgagatcctgcagcgactcacgcaggattggctg
cgccggcgcgtgctgcatgacccggaagtggccgcgctgatttccgatgacggggacgat
ccgctggcgtggatccggaatctggtgcggccgtacctgcggcatccgcgtaccacgatc
gacgctgcgcccgagttcgcgccccagctgctgaaggacttcgtgctcactgtggcgaag
gcattcgagcaggagaagcaggcgcgtcacctgatgggcttcgacgatctcctgcgccgg
ctgcacgatattctggtggccgaaggatcgggggggctgctggcctcgcgtatccgcgaa
cgcttccgcgtggcgctgatcgatgaattccaggataccgatcccacccagttcccaatc
ttctcgatggcattcagtgggtctccgctgttcctgattggcgatccgaagcaatccatc
ttcgcgttccggaacgccgatgtgcatgcctatctcaaggctgccgcgaacatcgaacgc
cgctacaccttgctcacgaatttccgcagcaccgatgcgatggttcgtggcgtcacgcag
ctctttcggaacaaccgcgagccgttcgcctgcagccccgacctgatcggtgtgcccgag
gtcacggcggcaaatcaggtgcgcattcccgaagccatcgcggatgacggcgggcacgcg
ttggagtggatgtgggtgggcgagatgcacaacacgtcgaagaacagcatcgcgaaagaa
cagggcgcttcgctggctattttggcggtcaccgtagaaatgcagcgcctgatggccaac
ggcctcggcgcggctcagatggccgtactggtgcgcaccaatgccgaggcacaggaaatc
aaaatgtcgctcgatgcggcgggcattccatgtgtcgtgggcgcgaatcaggatgtgctg
gccagtgacgaagctgatgaactcgtgcggctggctgaagcgattgccacgccgcgcgac
ggtgcggcggttcgggcggcgatggccacgcgcctctggggatgcgacgcggtggcggtg
gcggataccctgcgcaacgacgggaacggcgcctggaacggtgtgctcgatcggctggtt
cgggcgcgaacgatgtggttgcgacatggtggcgctacggcgctggcgtggttgatgaac
gagtgcggtgccacggcgcgactgctgtcgctggtcgatggcgaccgccgagtcacgaac
gtgcggcatgtcctcgagattctgcaggaggccgacgcagtctcggcgctcacgcccgac
gcggtgctcggctgggtggcgagcgagcgcggttccgctatcacgcccgaacgtcgcgaa
atgcggctggaaagcgatgccgatgccgtgcagatcctcaccattcacaaggccaaaggc
ctgcagtggcctgtcgtgttctgccccacgctctggcgcacgaagtcgttcgcgccgaag
gcactcgatgtaccgtactcgctcacgccgctcgacgacgggatggtgctcgatatcggt
tcgccttcgcaggcactgcgcagtgaacagaaggcgctcgaacagctcggtgaagatctg
cgtctcacgtacgtggcgctgacgcgtgccgagtcccgatgctacgtgacgtggggcacg
ttctccgacgccgccgcgtcgccgctcggttggctcattcagggcactggtgacacggtg
gagcgggagccgatcgatacgctgatcgccgccagcgtcggtacgatgggtatcgccgac
gtggtcttggaggcaccgtcgacgcggtcaccggccccggccaagccgcccgaacgccgc
gcagcgctcacgttcgcgacggcgccgggtcagctggccatctggcgcagcagcagtttc
accgtgctcacacgcaacgtgtcgcacgtggacagccgtgacgtcgacgacatcctgcaa
cccgatgaggcgcgtcgcaccgccatgcatgtggcgggctttcgcggtgtgccggccggt
gccgatatcggtaacgtgctacacggcctgttcgagcacaccgacttcacgaatccggac
gcgaccaccgacgcggccgtgcaggacgcccttcgcgcgtacggcgtgacggtgccacgc
gatggacggtggactccgacgcacatccgcgagatgatcgacacggtctgtcgcgccgaa
attcccgacgcgggcttcgcgctgagcgcggtgccgactgcagctacgttgcgcgagtgg
cgctttgccatgcccgtgcgggatttctcgatggcggcggtggcgagcgcgctcgagacg
caaggctcagaccacgcacgcgagtacgcgccgatgttgagacggctgcgtgacgatcag
ttccgtggctatctcaccggctcgatcgacctcgcctttgagcacgcggggcgctggcac
attctcgactggaaatcgaactggctcggcgccaacgacgctgactatacccccgctgcg
ctcgggcacgcgatgcacgcggcgcactacaccctgcagtatcacgtgtatctggtggca
ctccatcggcacctgcgggcgcgccaagctggatacaatgcgcgcaaccactggggacag
gtcacctacgcgttcctgcgcggtatcgccgcgaccggacacgacggctggttcaccgat
gcgccgacacccgagctgctgcacgcgctcgatcgcgcctttggaggcacgccatga
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