Gemmatimonas groenlandica: HKW67_22115
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Entry
HKW67_22115 CDS
T07783
Name
(GenBank) DEAD/DEAH box helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
ggr
Gemmatimonas groenlandica
Brite
KEGG Orthology (KO) [BR:
ggr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ggr03019
]
HKW67_22115
Enzymes [BR:
ggr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
HKW67_22115
Messenger RNA biogenesis [BR:
ggr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
HKW67_22115
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
AAA_30
DUF6473
Motif
Other DBs
NCBI-ProteinID:
QJR38031
UniProt:
A0A6M4J0L5
LinkDB
All DBs
Position
5150544..5153249
Genome browser
AA seq
901 aa
AA seq
DB search
MRTPRDRYLPPDRDAFVAAKPPTGRVIVIAPTRAACETIELAVGLHLDTFLERTRGDDLR
RLASSGQGFGIVAGTGTGKTLAIRPIAETILGTTELKAGVVNREREATPETPSWNVVVIT
TGIARRWFQDGDIQPTDTLVVDEIHQTSAELELCLALGKRVGCRFIWLSATVDPTFYSRY
LESADVLQVSAFDATKAAKVEVERKQPLNFLDDKFLQKVSRSERGVAIFLPTRASVEEAA
EWVRLRYPRITAAHYHGGEPIRVIRPFLEGVVPKPFFLAMTAAGQSALNVPGLDTVIIDD
TRFTNVIDRGRNVLTRVHLGSNEILQMAGRVHGRVENGRVYILSDRDIRFESLKPTAPDF
QLAGDSERVALTCADLGVQADALDLPVPLDRVAYRKAIAHLESRGLIENGRLTTYGKAVE
ALPVDRAWGELIVNGDDELLPMLAVMSGIDSLHRMTREGRDLEGLVVRGSDHLTAYNVYA
DGFRAAGYIGEVYGLSRHMFDAERIAQWAEQRGVLVKSLEDAALAMASVYRSVGMPLPTT
LPLVRPDVQRRFGDLLARFMPFDLVIEEQTPEGHEARVSKTSVCGSWGAVAGPLRYFADR
FGVPRASIEGTQLSIELIKQYAQRHLPELALDPDRKQSPVLLRRRLTYFGFELARESEGL
DEFPPEHAQAARHLLAEAAARNELRHASARRNQPVVEEIREVWRRLGGITPRLGQAELTA
WYEQQMGAATNWETIRNTPMLIDRRDFVSHEQVAEARAMPGAVEIRDRTVPMDYDVEEHD
GRLVPVVRLRVPEKLARTMVQEEVPSLDRPVRFVVPRGQRGSVRADTLDDLQHKLDLPFT
DDERTRTTEQKVERKGHDRGRGGDRGGARGGERGGERGGERGGGKNGPGGHRHPGKGRRR
R
NT seq
2706 nt
NT seq
+upstream
nt +downstream
nt
gtgcgcactccacgtgatcgttacctaccccccgaccgcgacgcctttgtcgcggcgaag
ccgccgaccgggcgcgtcatcgtcatcgcgccgacgcgtgcggcctgtgagacgatcgag
ctcgcagtcggcctgcacctcgacacctttctcgaacgcacgcgaggggacgacctgcga
cgcctcgcgtcgagcggccaaggctttggcattgttgcgggcacgggcacgggtaagaca
ctggcgattcgtcccatcgctgaaacgattcttggtacgaccgagctgaaagcaggcgtc
gtgaatcgcgaacgggaagcgacaccggaaacgccgtcgtggaatgtggtggtcatcacg
accggcatcgcgcgccggtggtttcaggacggcgatatccagcccaccgacacgctggtg
gtcgacgagatccaccagaccagtgcggagctcgagctgtgtctcgcgctcggcaagcgc
gtgggatgtcgattcatctggttgtcggcgacagtcgaccccacgttctactcgcgctat
ctcgagagcgcggatgtgttgcaggtctcggcattcgatgccacgaaggccgccaaggtc
gaagtggaacggaagcagccgctgaattttctcgacgacaagttcctgcagaaggtgtcc
cgctcggagcggggcgtggcgatcttcctgcccacccgcgcgtcggtcgaagaggcggcg
gagtgggttcgcctgcgctatccacgcattacggccgcgcactatcacggcggcgaaccg
attcgtgtcatccgtccgtttctcgagggcgtggtgccgaagccgttcttcctcgcgatg
acggcggccggtcagagcgcgttgaatgtgccggggctcgacaccgtgatcatcgacgac
acgcgcttcaccaacgtgatcgaccgcggacgcaacgtgctcacgcgcgtgcacctggga
tcgaatgagatcctgcagatggccggacgcgtgcatggccgcgttgagaatggccgtgtg
tacattctgagcgatcgcgatatccgcttcgagtcgctcaagcccacggcgcccgacttt
cagttggcgggagactccgagcgcgtggcgctcacctgcgccgaccttggcgtccaggcg
gacgccctcgacctgccggtaccgctcgatcgcgtggcgtaccgcaaggcgattgcgcat
ctcgagtcgcgaggactgatcgagaacggacggctgaccacgtacggcaaggccgtggaa
gcgttgccggtggatcgagcatggggagagctcatcgtgaacggcgatgacgaactgctg
ccgatgctggcggtgatgagcggcatcgactcgctgcatcgcatgacgcgcgaagggcgc
gatctagaagggttggtggtgcgcggcagtgatcatctcacggcgtacaacgtctacgcc
gacggcttccgtgcggccggttacatcggggaagtgtacgggctgtcgcggcacatgttc
gacgccgagcggatcgcgcagtgggccgagcagcgcggggtgctcgtgaagtcgctggaa
gatgcggcgcttgcgatggccagcgtataccgctcggtaggcatgccgttgccgaccacg
ttgccgctggtgcgtcctgacgtacagcgacgcttcggcgatctgctcgcgcgcttcatg
ccgttcgatctggtgatcgaggagcagacaccagaggggcacgaggcgcgcgtgtcgaaa
acgagcgtgtgcggcagctggggtgccgtggcaggcccgctgcgctacttcgccgatcgc
ttcggtgtgccgcgggccagcatcgaaggcacgcagctgtcgatcgaactgatcaagcag
tacgcgcagcgtcatttgccggagttggccctcgatcccgatcggaagcagtcgccggtg
ttgttgcgccgacggctcacctacttcggattcgaactggcgcgcgagagtgaaggtctc
gacgaatttccgccggagcatgcgcaggcggcgcggcaccttctggccgaagcggcggcg
cgcaatgaattgcggcatgcgtccgcgcgtcgcaatcagccggtggtcgaggaaatccgc
gaagtgtggcgacgccttggcgggatcacgccgcgtctcgggcaggcggagctgaccgcg
tggtacgagcagcagatgggtgcggccacgaactgggagacgattcggaacacgccgatg
ttgatcgatcggcgggatttcgtcagccacgaacaggtggccgaagcacgcgcgatgccg
ggtgcggtcgagattcgcgatcgtacggtgccgatggattacgacgtcgaggagcacgac
ggacggctggtgccggtggtgaggctgcgcgtaccggagaagctggcgcgcacgatggtt
caggaggaggtgccgtccctcgatcgtccggtgcgcttcgtggtgccgcgtggtcagcgt
gggtcagtgcgtgccgacacgctcgacgacctccagcacaagctcgacctgcctttcacc
gacgatgagcgcacccgtaccacagagcagaaagtcgagcggaaaggccacgaccgcggc
cgcggaggcgatcgcggaggcgctcgcggtggtgaacgcggtggtgaacgcggtggtgaa
cgcggcggcggcaagaacggacccggtggccaccgtcacccggggaaggggcggcggcgg
cgctga
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