Gemella haemolysans: NCTC10459_00543
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Entry
NCTC10459_00543 CDS
T06551
Symbol
rho
Name
(GenBank) Transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
gha
Gemella haemolysans
Pathway
gha03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gha00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCTC10459_00543 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gha03021
]
NCTC10459_00543 (rho)
03019 Messenger RNA biogenesis [BR:
gha03019
]
NCTC10459_00543 (rho)
Transcription machinery [BR:
gha03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
NCTC10459_00543 (rho)
Messenger RNA biogenesis [BR:
gha03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
NCTC10459_00543 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
Rho_N
OB_RNB
AAA
ATPase_2
Spore_III_AA
NACHT
AAA_14
S1CSD-TOTE-2
AAA_24
DUF3008
Motif
Other DBs
NCBI-ProteinID:
VEI38308
LinkDB
All DBs
Position
1:612152..613420
Genome browser
AA seq
422 aa
AA seq
DB search
MSNVKFDEMYKSMNTKELTALAKELGVPRYYTLNKKELVLAILEKQSVSEEHYYASGILD
DIHPENGFGFLRTVDYKKGETDIYISASQIRRFELKKGDEVYGKVRKPREGERYAGILQV
DKVNDVDAEVAKGRTHFQALTPIYPNQKIVLETTKEKLSTRFVDLVAPIGFGQRGLIVAP
PKVGKTTLLKDIANSIRKNYPDKKLIILLIDERPEEVTDMERSVRGADVVSSTFDETSEN
HIKMAELVIEHAKRRVELGQDVIILMDSITRLARAYNIVEPSSGKVLSGGVDPSSLHKPK
AFFGAARNVEGGGSLTIIATALINTGSRMDDLIFEEFKGTGNMEIVLSPELASRRVYPAI
DFLKSSTRKEDLLLTEDEVKILWQTRRKLEDVSEPTIGVLNHLRKHESNEDYIAEMKKFI
RD
NT seq
1269 nt
NT seq
+upstream
nt +downstream
nt
atgagtaacgttaaatttgatgaaatgtataaaagtatgaatactaaagaacttacagct
ttggcaaaagaattaggtgttccaagatattatacattaaataaaaaagaattagtttta
gcaattttagaaaaacaatcagttagtgaagaacattactatgcctctggaattttagat
gatattcatccagaaaatggttttggctttttaagaacggttgattataaaaaaggtgag
acggatatttatatttccgcttctcaaattcgtcgttttgaacttaaaaaaggtgatgaa
gtctatgggaaggttcgtaaacctcgtgagggtgagagatatgcaggaattcttcaggtt
gataaagttaatgatgttgatgcagaagttgcaaaaggtagaactcatttccaggcgtta
acaccgatttatccgaatcaaaaaattgttttagagactactaaggaaaaactttctaca
agatttgttgatttggtagcaccgattggattcggacaacgtggattgattgttgcacca
cctaaagtaggtaaaacaacactgctaaaagatatagcaaattcaattagaaaaaattat
cctgataagaagttgattatccttttaattgatgaaagaccagaagaggttactgatatg
gaaagatctgtaagaggtgcagatgtagtaagttctacatttgatgagacttcagaaaat
catattaagatggctgagttggtaattgaacatgctaaacgtcgtgtagaacttggtcaa
gatgtaattattcttatggatagtattacaagacttgcacgtgcttataatattgttgag
ccaagtagtggtaaagtcttaagtggaggggtagatccatcgagccttcacaagccaaaa
gcattctttggagcagcgagaaatgttgaaggtggaggaagtttaactataatcgcaact
gccttgattaatactggttcgagaatggatgatttaatattcgaagagtttaaaggaact
gggaatatggaaattgtcttatcacctgagttagcttcaagaagagtttatccagctatt
gatttcttgaagagttctacaagaaaagaagatttattactaactgaagatgaagtaaaa
atattatggcaaacacgtagaaagcttgaagatgttagtgaaccaactatcggtgtattg
aatcatcttagaaaacatgaaagtaatgaggactacattgctgaaatgaaaaaattcata
agagattaa
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