Gemella haemolysans: NCTC10459_00614
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Entry
NCTC10459_00614 CDS
T06551
Symbol
rnr
Name
(GenBank) Ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
gha
Gemella haemolysans
Pathway
gha03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gha00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCTC10459_00614 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gha03019
]
NCTC10459_00614 (rnr)
03016 Transfer RNA biogenesis [BR:
gha03016
]
NCTC10459_00614 (rnr)
Enzymes [BR:
gha01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
NCTC10459_00614 (rnr)
Messenger RNA biogenesis [BR:
gha03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NCTC10459_00614 (rnr)
Transfer RNA biogenesis [BR:
gha03016
]
Prokaryotic type
tRNA degradation factors
NCTC10459_00614 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
OB_RNB
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
VEI38378
LinkDB
All DBs
Position
1:682885..685011
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AA seq
708 aa
AA seq
DB search
MLEKIEKIFKEEKVLSIEDLKEKLNIESAKEFVELVKNVGKLERKSVVTQLPSEKFLYVK
EALEIEGVIRLHQKGFAFVYSADLGIEVYIPKGFTQSAMTGDVVLVKVDSVYKDDRNLEG
IVQKVLERNTKYTVGTLTNAKFFSFVKSDDKNIVKYIKITNAKNFNLVDGSKVLVEITDY
SKVSFEDHKGIIIKSIGHKDDPGVDILSVIYKHNIPNEFPQEVLEQTEKISDEIKLEDKY
RDCTNEMVVTIDGDDAKDLDDAISVIKTKKGYRLKVFIADVSRYVTEDSPLDKEAANRGC
SVYLADRVVPMLPRKLSNNICSLNPQVLRYTICCDIDFNTKGFPESYDIYPAVIKSKGRL
TYKKVNEVYADNKETIEEYKEYVPMLKTALELSTKIRANRETRGAIDFDKPESKVVVDEN
GEVLDIVLRERGISEKLIEDFMLSANEVIGEHFYWMQVPFIYRIHEEPKMEKLRQFFDIA
ASLGYRTKGKIEEIEPYMLANMLRKFKGEVVETMLSTILLRTMNQARYSINNIGHFALAT
KYYTHFTSPIRRYPDLLVHRMIRTYLFNGDVSDQTIDNFISRLPDLAESSSEYEKRAVDC
EREVDRMKKCEYMLKYQEQTFRGIVSSVTNFGVFITLERSNIEGLVHIKAMNDDYYTYDQ
KNMLLIGRRKKKVYRLGDEVIVKVANVDLENQEIDFKILKHKSLISKK
NT seq
2127 nt
NT seq
+upstream
nt +downstream
nt
atgttagaaaaaattgaaaaaatatttaaagaagaaaaagttttaagtatagaagattta
aaagaaaagttaaatattgaatcagcaaaggaatttgttgaattagtaaagaatgttgga
aagttagagagaaaatcagttgttactcaactaccaagtgaaaagtttctttacgttaaa
gaagcattagaaattgaaggggtcattagattacatcaaaaaggatttgcttttgtatat
tctgcagatttaggaatagaggtatacattcctaaaggtttcacacaaagtgccatgaca
ggtgatgttgttttagtaaaagtagatagtgtttataaggatgaccgcaatctagaaggg
atagtccaaaaagtattggaaagaaatactaagtatacagttggaacgctgactaatgct
aagtttttttcttttgttaaaagtgatgataaaaatattgtaaaatatataaaaataacg
aatgctaaaaactttaatttagttgatggtagtaaggtactagttgaaattacagattat
tcaaaggttagttttgaagatcataagggaattatcataaaatcaattggtcataaagat
gatccaggtgtagatattctttccgtgatttataaacataatatcccgaatgagttccct
caagaagttttggagcaaactgagaaaataagtgatgaaataaaacttgaagataagtac
agagactgtactaatgaaatggtagttactattgatggagatgatgctaaagatttagat
gatgctatttcagtgattaaaactaaaaaaggttatagattaaaagtatttatagctgat
gttagtaggtatgtaactgaagatagtccattagataaagaggcagctaataggggctgt
agtgtttatttagctgacagagtagttccaatgttacctagaaaattatctaataacatt
tgttcgttaaatccccaagtattacgttatacaatttgttgtgatatcgattttaatact
aaaggatttcctgaaagttatgacatatatccagctgtaataaaatctaaagggagattg
acttataaaaaagttaatgaagtctatgcagataataaagaaacgatagaagaatataaa
gaatatgtacctatgctaaagacagcattagaattatcaacaaaaattcgtgcaaataga
gaaacaagaggtgctattgattttgataaacctgaatcaaaagtagtggttgatgaaaat
ggagaagttttagatattgttcttcgtgaaagaggtatatcagaaaaactaattgaagat
tttatgctaagtgcaaatgaagtaattggagagcatttctactggatgcaagttccattt
atttatcgtattcatgaagagcctaaaatggaaaaattaagacaattctttgatattgct
gcaagtcttggttatagaacaaaaggtaaaattgaggagattgaaccttatatgttagca
aatatgcttagaaaatttaaaggagaagttgtagaaactatgctttctacaattcttctt
agaactatgaatcaagctagatattcaataaataatataggtcattttgcacttgctacg
aaatattatacgcattttacatcaccaatcagacgttatccggatttattggtgcataga
atgattagaacatacttgtttaatggtgatgtgtctgatcaaactatagataattttatt
agtagattaccggatttagctgagagttcttcagaatatgaaaaacgagcggttgattgc
gaacgtgaagtcgatagaatgaaaaaatgtgagtatatgttaaaatatcaagaacagaca
tttagaggtattgtctcgagtgttacaaactttggtgtatttattactcttgaacgaagt
aatattgagggattagtgcatattaaggcaatgaatgatgattattatacatatgatcag
aaaaatatgttattaattggtcgtagaaagaaaaaagtttatagacttggagacgaagta
atagttaaagtagcaaatgttgatttagaaaatcaagaaatagactttaaaatattgaaa
cacaaatcattaattagtaaaaaatag
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