Gemella haemolysans: NCTC10459_01093
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Entry
NCTC10459_01093 CDS
T06551
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
gha
Gemella haemolysans
Pathway
gha03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
gha00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NCTC10459_01093 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gha03021
]
NCTC10459_01093 (rpoB)
03400 DNA repair and recombination proteins [BR:
gha03400
]
NCTC10459_01093 (rpoB)
Enzymes [BR:
gha01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NCTC10459_01093 (rpoB)
Transcription machinery [BR:
gha03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NCTC10459_01093 (rpoB)
DNA repair and recombination proteins [BR:
gha03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NCTC10459_01093 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
Motif
Other DBs
NCBI-ProteinID:
VEI38839
LinkDB
All DBs
Position
1:complement(1199958..1203761)
Genome browser
AA seq
1267 aa
AA seq
DB search
MQKVKFGKHRQRRSYARISEVIDLPDLIEIQTLSYDKFLETGLKDVFKDVSPIEGNNDKL
SLEFIDYKLGTPKYDVDESKERDATYSAPLRVRVRLINKERDEIKEQEVFMGELPLMTET
GTFIINGAERVIVSQLVRSPSVYFTEDDKLKVKNIPNAYKTTVIPNRGAWLEFEKDIKGL
VYARIDRTRKIPLTTLIRALGFESDESIIKLFGEDTELLNTLEKDENLDTGTALKVIYDK
LRPGEPANVETAKATLHGRFFDPRRYDLAKVGRYKLNNKLHVGERLENQILVEPIVDTET
GEILVEKGTKLTREIIDGIYEELGTTANVVEFDMNESLDGSDSLKLQLFKIVNQVKVGND
YDIDELTDDQVLHVIGNGAPNKDVLTLTIADIVASINYYLLLIRTRRNNDGFEFELIGRV
DDIDHLGNRRLRCIGELLQNQIRVGISRMERVVRERMSIQDTNEITPQQLINVRPVTAII
KEFFGSSQLSQFMDQVNPLSELTHKRRLSALGPGGLTRERAGMEVRDVHYSHYGRMCPIE
TPEGPNIGLINSLSSFARINEFGFIMTPYRKVEFDGEGRPYVTENVQYLTADQEDKYVVA
QSTANVDEKGYFVDEEVVCRFRGDNTVKPREMMNFMDVSPKQVVSAATACIPFLENDDSN
RALMGANMQRQAVPLMITEAPFVGTGMEHLAARDSGAAVIAKYPGIVEYVDGAKIKVRRI
ETLEGKEIKGDLDTYVIHKFVRSNHSTAYNQKPIVKVGDRVEPKDILADGPSMDKGELAL
GKNLVVAFVNWDGYNYEDAVIMSERLVKDDVYTSIHVEEYETDARDTKLGPEEITREIPN
VGENALRNLDARGIIRIGAEVKDGDILVGKVTPKGLTEQTPEEKLLYAIFGAKSKEVRDT
SLRVPHGADGVVADVKIFKREDGAELPNGVNELVRVFIVQKRKIRVGDKMAGRHGNKGVI
SNILPEEDMPYLPDGTPVDVMLNPLGVPSRMNIGQVLELHLGMAAKQLGIHVATPVFDGA
TDEDVWSTVAEAGMAKDAKTVLYDGRTGEPFDSCVSVGVMYMIKLAHMVDDKLHARSIGP
YSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTYKSDDTNGRVKTYEAIVK
GENIPRPGVPESFRVLMKELQALGMDFRVMDNEDNEVDMGDIDLGDTIDFHESHNHNHNE
EANETEKASKENTENGYQSLANLILSDSEEEVEEESSEETSGYQALASLLMSDTDEYEDV
EDDTDEE
NT seq
3804 nt
NT seq
+upstream
nt +downstream
nt
ttgcaaaaagttaaatttggtaagcacagacaaagacgtagctatgctagaatatcagag
gtaattgatttaccggacttaattgaaattcaaaccttatcttatgataaatttttagaa
actggtctaaaagatgtttttaaagatgtatcaccaatagaaggtaataatgataaatta
agtttagaatttatcgactataaattaggaactcctaaatatgatgttgatgagtctaaa
gaacgtgacgctacatattcagcacctttaagagtgcgcgtacgtttaattaataaagaa
cgtgacgaaattaaagaacaagaagtatttatgggtgaattaccgttgatgactgaaact
ggaacgtttatcatcaatggtgcagaacgtgtaattgtatctcaattagtacgttcgcct
tctgtatattttacagaagatgacaaacttaaagttaaaaatattccaaatgcctataaa
acaactgttattcctaacagaggagcttggttggaatttgaaaaagatattaaaggatta
gtttatgctcgtattgacagaactagaaaaattcctttaacaacgcttattagagcgtta
ggttttgaatctgacgaatctattattaaattattcggtgaagatacagaactattaaat
acattagaaaaagatgaaaacctagatacaggaactgcgttaaaagtaatttatgataaa
ttacgtcctggagagccagctaacgtagaaactgcaaaagcgactttacacggtagattc
ttcgatccaagaagatatgaccttgctaaagtaggacgttataaactaaataacaaactt
cacgttggtgaacgtctagaaaaccaaattctagttgaaccaatcgttgatacagaaaca
ggagaaattttagtagaaaaaggtactaaattaacacgtgaaatcattgatggaatttat
gaagaattaggaactacagctaacgtagttgaattcgatatgaatgaaagtcttgatgga
agtgatagcctaaaattacaattattcaaaattgtaaaccaagttaaagtaggtaatgac
tatgatatcgatgaattaactgatgatcaagtgttacacgtaattggtaatggagcacct
aataaagatgttctaacattaacaattgctgatatcgtagcaagtatcaactactatcta
ttattaatcagaactcgtagaaataacgacggatttgaatttgaattaatcggacgtgta
gatgatatcgaccaccttggtaaccgtcgtctacgttgtatcggtgaattattacaaaac
caaattcgtgtaggtatttctcgtatggaacgtgttgttcgtgaacgtatgagtattcaa
gatacaaacgaaattactccacaacaactaattaatgtaagaccagttacagcgattatc
aaagaattctttggaagttctcaactttcacaattcatggaccaagtaaacccattaagt
gagcttactcacaaacgtcgtttatcagcacttggacctggtggtttaacaagagaacgt
gctggaatggaagtacgtgacgttcactattcacactatggtcgtatgtgtccgattgaa
acaccagagggaccaaacatcggtcttattaactcactttcatcatttgcgcgtataaat
gaatttggattcattatgactccatatagaaaagttgaatttgatggagaaggtcgtcca
tatgtaactgaaaacgtacaatacttaacagctgatcaagaagataaatacgtagtagca
caatcaacagctaatgttgatgaaaaaggttacttcgtagatgaagaagtagtatgtcgt
ttcagaggagataacacagttaaacctcgtgaaatgatgaactttatggatgtatcgcct
aaacaggtagtatctgctgccactgcatgtattccgttcttagagaatgatgactctaac
cgtgccctaatgggagcgaacatgcaacgtcaagcagtaccattaatgattactgaagca
ccattcgttggtacaggtatggagcacctagcagcacgtgactcaggagctgcggttatc
gctaaatatccaggtatcgttgaatacgtagatggagcgaaaattaaagtacgtcgtatt
gaaactctagaaggtaaagagattaaaggtgacttagatacttacgtaattcacaaattc
gtacgttctaaccactctactgcttacaaccaaaaaccaatcgtaaaagttggagataga
gtagaacctaaagatatccttgcagatgggccatctatggataaaggagaattagcttta
ggtaaaaaccttgtagtagcattcgtaaactgggatggatataactatgaggatgctgtt
atcatgagtgaacgtttagtaaaagacgatgtttatacttctattcacgtagaagaatat
gaaacagatgctcgtgatacaaaacttgggccagaagaaattactcgtgagattccaaac
gtaggtgaaaatgcacttagaaacttagatgcacgaggaatcattcgtattggggctgaa
gttaaagatggagatattttagtaggtaaagttacaccgaaaggattaactgaacaaact
ccagaagaaaaattattatatgctatctttggagctaaatctaaagaagtacgtgatact
tcattacgtgtacctcacggtgctgatggagtagttgctgatgttaaaatctttaaacgt
gaagatggtgctgaattacctaacggtgtaaatgaacttgttcgtgtatttatcgtccaa
aaacgtaaaattcgtgtaggagataaaatggccggtcgtcacggtaacaaaggggttatc
tcaaatatcttaccagaagaagatatgccttacctaccagatggtacaccagttgacgta
atgttaaacccacttggggttccatctcgtatgaacattggacaagtattagagctacac
ttaggtatggctgctaaacaacttggaatccacgtagctacaccagtattcgatggtgct
actgatgaagatgtttggtctacagttgcggaagctggaatggctaaagatgctaagaca
gttctttatgacggacgtacaggtgagccatttgatagctgtgtatctgtaggggtaatg
tacatgattaaacttgcacacatggttgatgataaacttcacgctcgttcaattggacca
tactcattagtaacacaacaaccacttggaggtaaagctcaattcggtggacaaagattt
ggtgagatggaggtatgggcacttgaagcttatggtgctgcatatactcttcaagaaatc
ttaacgtacaaatcagatgatactaatggtcgtgttaaaacatacgaagctatcgttaaa
ggtgaaaacattccacgtccaggagttcctgaatcattccgagtacttatgaaagaactt
caagcactaggtatggacttcagagtaatggataatgaagataacgaagtagacatgggt
gatatagatttaggagatacaattgatttccacgaatcacacaatcacaaccacaacgaa
gaagctaatgaaactgaaaaagcttcaaaagaaaacactgaaaatggatatcaaagttta
gctaacttaattctatctgattcagaagaagaagttgaagaagaatcaagtgaagaaact
tcaggatatcaagcattagctagtcttttaatgtcagatacagatgagtatgaagacgtt
gaagatgatactgatgaagaataa
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