Geoalkalibacter halelectricus: L9S41_02220
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Entry
L9S41_02220 CDS
T09882
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ghc
Geoalkalibacter halelectricus
Pathway
ghc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ghc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
L9S41_02220 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ghc03400
]
L9S41_02220 (mfd)
Enzymes [BR:
ghc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
L9S41_02220 (mfd)
DNA repair and recombination proteins [BR:
ghc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
L9S41_02220 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
RecG_dom3_C
Cas3-like_C_2
AAA_22
UB2H
DUF3638
DUF7053
Motif
Other DBs
NCBI-ProteinID:
UWZ80225
LinkDB
All DBs
Position
535203..538733
Genome browser
AA seq
1176 aa
AA seq
DB search
MSRHAPFLVSGAMDSQDTTDIAHATSRSLCQQLRGGARRLEVHGLAGSAGAYLLRALLRD
NQGPLFILTPDQKSAEQLADDLSFYAGEAAAVELFPQWEVPPFEPLSPHPEVEARRIATL
HALLEGRPRAVVLPVRAAMQRLIARPILADLSLKLIAEEEYERAALLERLGHLGYQATPL
CEDRGTFSVRGDLIDLFPPTSAEPVRLEFFGDFIERMRPFDPATQRSRDQELDELIVLPA
RELVLAGRHWETFTRAFKERCDALDLPRPRREQMLEALREGLLPPGSHFLLPFNYPGLET
FFDYAGAGTWVLVDPAAVEQEADSFAAEAIQGAARAADKADPYPEWHSLYLSARELEEHL
RPHPRIDFCGLQVYRLGEDRIRCRFNAQGNNDLRAALRREGGTLEPLVEHLREWSAQQWR
ILLVCHQRGQAERLRDLLAEHDVALTFAPSGGLDQARRGEILLTLGELSAGLRLPDERLA
VVTEEEVFGPRVRRRGRSEARARAMLSTLAELREGDYIVHTDHGIGIYRGLRHLGLNQIR
GDFLHLEYAGGDKLYLPVDRIEKVQKYVAAEGHTPRLDKMGGQGWEKARLRARAAAEELA
RELLQIYARREMSDAFKFSPPDRLYREFEAAFPYEETPDQQQAIDEVLADMAQHKPMDRI
VCGDVGYGKTEVAIRAAFKAVEDGKQVALLVPTTVLARQHWQTFRERLSDYPLSVEMVSR
FRSPAEVREVLERTAAGKVDILIGTHRLIQRDVKFKDLGLLIIDEEQRFGVSHKEKLKKM
RAAVDVLTLTATPIPRTLHMSLAGLRDLSVIDTPPVDRLAVRTYVTRFDDDVIRDAILRE
LRRGGQVFFVHNRVQNIDAMAEFIQTLVPEAKVAVGHGQMGEKQLEEVMVGFIEGKSNVL
VCSTIIENGLDIPRANTILINRADCFGLAQLYQLRGRVGRSRHRAYAYLLIPGEATLTRE
ARERLRILQELSDLGAGFRIASHDLELRGAGDLLGANQSGQIAAIGFEMYTDLLEETIAE
LKGLEREEKIDPEIRLGLSAFLPEKYMPDPNQRLVFYKKLAAADDDETLYALADELRDRY
GELPDPAQLLLEVMKLRVLMKKLRVELAEYTGRHLLLGFHSATPVPPERILERLQDPRGG
CSFTPDYRLSIDIGRKERTEVLDLAKKELQGFCRLC
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
gtgtcacgacacgccccctttctcgtttcgggcgccatggattcgcaggacaccaccgac
atcgctcacgccaccagtcgctccctgtgtcaacagctgcgcggcggcgcccgccgcctg
gaggttcacggcctggccggctcggccggagcctacctgctgcgcgccctgctgcgcgac
aaccagggcccgctctttattctcacccccgaccagaaaagcgccgagcaacttgccgac
gacctgagcttttacgcgggcgaggccgccgccgtcgagttgtttccccaatgggaggtg
ccacccttcgagcccctctcgccccacccggaagtcgaggcacgccgcatcgccacgctc
cacgctctgcttgaggggcgcccgcgcgccgtggtgctgccggtgcgtgcggccatgcag
cgcctcattgcgcgcccgatcctggccgacttgagcctcaagctgatcgccgaggaagaa
tacgagcgcgcggcgctgctcgaacgactgggccatctgggctaccaggcgacgcccctg
tgcgaggatcgcggcaccttcagcgtgcgcggcgacctcatcgacctgtttccacccacc
agcgccgagccggtgcggctggagttcttcggcgatttcatcgagcgcatgcgccccttt
gatccggccacccaacgctcgcgcgaccaggaactcgacgaactgatcgtgctgccggcg
cgtgaactggtgctcgccgggcgccactgggaaaccttcacccgcgccttcaaggagcgc
tgcgacgccctcgatcttccacgtccgcgccgcgagcagatgctcgaggccctgcgcgag
gggctgctgccgcccggcagccattttctgctgcccttcaactatccggggctggaaacc
tttttcgattacgccggcgcgggcacctgggtgctggtcgatccggcggccgtggagcag
gaggccgacagcttcgccgccgaggccatccaaggggcagcgcgcgcggcggacaaggcc
gatccctaccccgagtggcacagtctctacctctcggcgcgcgagttggaggagcacctg
cgcccccacccgcgcatcgacttctgtgggctgcaggtctaccgcctgggggaagaccgc
atccgctgccgctttaacgcccagggcaacaacgacctgcgcgccgccttgaggcgcgag
ggcggcaccctggaacccctggtggagcacctgcgcgaatggagcgcgcaacagtggcgg
atccttctggtctgccaccagcgcggccaagccgaacgcctgcgcgacctgctcgccgaa
cacgacgtcgccctgaccttcgcaccctcgggcggcctcgatcaagcccggcgcggcgag
attctgctgaccctgggtgagctctccgccggcctgcgcctgcccgatgagcgcctggcc
gtggtcaccgaggaagaggtgttcggtccccgcgtgcggcgccgggggcgctccgaggcc
cgcgcccgcgccatgctctcgaccctcgccgagttgcgcgagggcgactacatcgtgcac
accgaccacggcatcggcatctaccgcggcctgcgccacctcggcctcaaccagatccgc
ggcgacttcctgcatctcgaatacgccggcggcgacaagctctacctgcccgtcgatcgc
atcgaaaaggtgcagaaatacgtcgccgccgagggccataccccgcgcctcgacaagatg
ggcggccagggctgggaaaaagcgcggctgcgggcgcgcgccgccgccgaggaactggcc
cgtgagctgctgcagatctacgcgcgccgcgagatgtccgacgcctttaagttctcgccc
cccgaccggctctatcgcgaattcgaggcggcctttccctacgaggaaacccccgaccag
cagcaggccatcgacgaggtgctcgccgacatggcgcagcacaagcccatggatcgcatc
gtgtgcggcgacgtcggttacggcaagaccgaggtggcgatccgcgccgccttcaaggcg
gtggaggacggcaagcaggtggcgctcctggtgcccaccacggtgctcgcccgccagcac
tggcagacctttcgcgagcgcctcagcgactatcccctgagcgtcgagatggtgtcgcgt
tttcgcagccccgccgaggtgcgcgaggtgctcgaacgcaccgccgccggcaaggtcgac
atcctcatcggcacccaccgcctcatccagcgcgacgtcaaattcaaggatctcggcctg
ctgatcatcgacgaggagcagcgcttcggcgtcagccacaaggaaaagctcaagaaaatg
cgcgccgccgtggacgtgctgaccctcaccgccacgcccatcccgcgcaccctgcacatg
agcctcgccgggctgcgcgacctctcggtgatcgacaccccgccggtggatcggctggcg
gtgcgaacctacgtcacgcgctttgacgacgacgtgatccgcgacgccatcctgcgcgaa
ctgcggcgcggcggccaggtgttcttcgtccacaaccgcgtgcagaacatcgacgccatg
gccgaattcatccagaccctggtgcccgaggccaaggttgcggtgggccacggccagatg
ggcgaaaagcagctcgaggaggtgatggtcggcttcatcgagggcaaaagcaacgtactg
gtgtgcagcaccatcatcgaaaacggcctcgacatcccacgcgccaacaccatcctcatc
aaccgcgccgactgcttcggcctggcccagctctaccagttgcgcggccgagtggggcgc
tcgcgccaccgcgcctacgcctacctgctcatccccggcgaggcgaccctgacccgcgag
gcgcgcgagcggctgcgcatcctgcaggagctctccgatctcggcgccggctttcgcatc
gccagccacgatctcgagctgcgcggcgccggtgatctgctcggcgccaaccaatcggga
cagatcgccgccatcggcttcgagatgtataccgacctgctcgaagagaccatcgccgaa
ctcaagggcctggagcgcgaggaaaagatcgacccggaaatccgcctcggcctgagcgcc
tttttacccgagaaatacatgcccgatcccaaccagcgcctggtgttctacaagaagctc
gccgccgccgacgacgacgagaccctctatgccctcgccgatgaattgcgcgaccgctac
ggcgagttgcccgatccggcgcaactgctgctcgaggtgatgaagctgcgcgtgctgatg
aaaaaactgcgcgtcgaattggccgagtacaccggacgccacctgctgctcggctttcac
tccgccaccccggttccgccggagcgcatccttgagcggctgcaagatccgcgcggcggc
tgcagcttcacccccgattatcgcctgagcatcgacatcggccgcaaggagcgcaccgag
gttctggatctggccaaaaaagaattgcagggattttgccggctatgctaa
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