Geoalkalibacter halelectricus: L9S41_05215
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Entry
L9S41_05215 CDS
T09882
Symbol
thpR
Name
(GenBank) RNA 2',3'-cyclic phosphodiesterase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
ghc
Geoalkalibacter halelectricus
Brite
KEGG Orthology (KO) [BR:
ghc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ghc03016
]
L9S41_05215 (thpR)
Enzymes [BR:
ghc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
L9S41_05215 (thpR)
Transfer RNA biogenesis [BR:
ghc03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
L9S41_05215 (thpR)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
AKAP7_NLS
Motif
Other DBs
NCBI-ProteinID:
UWZ80802
LinkDB
All DBs
Position
complement(1172009..1172578)
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AA seq
189 aa
AA seq
DB search
MNLRAFIALPLPAHLRQEIAALQQTLAPVLPRVRWVNPEQMHLTLRFFPALPEECLDQVR
ETMLSVGNFHAPFQVDIGGFGAFPNLARPRVFWLGLRPEAPLLGLQRHLDEGLHAIGLGG
EERPFKPHLTLGRAKDAIRLDPARMTAYQNWAGGTWRVTEMRCYQSRLTPAGALHTSLFH
APLGAGGAP
NT seq
570 nt
NT seq
+upstream
nt +downstream
nt
atgaacctgcgcgcttttatcgccctgcccctgcccgcccacctgcgccaggaaatcgcc
gcgctgcaacagacgctggcccctgtgctgccgagggtgcgctgggtcaaccccgaacag
atgcatctgaccctgaggtttttccccgcgctgcccgaagaatgccttgatcaagttcgc
gaaactatgctatccgtagggaatttccacgccccgttccaggttgacatcggcggtttc
ggcgcctttcccaacctcgcccgccctcgtgttttttggctcggtctcaggcccgaagca
ccgttgctcgggctgcaacggcacctggacgaagggctccatgccatcggcctgggcggt
gaggagcggcccttcaaacctcacctgactcttggacgggccaaggacgccatcaggctc
gacccggcccgcatgaccgcttaccagaactgggccgggggcacctggcgagtgacggaa
atgcgctgctatcaaagccgcctgacccctgcgggcgccctccacaccagcctgtttcac
gcgcccctcggcgccggcggcgcgccctga
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