Geoalkalibacter halelectricus: L9S41_06615
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Entry
L9S41_06615 CDS
T09882
Name
(GenBank) HD domain-containing protein
KO
K03698
3'-5' exoribonuclease [EC:3.1.-.-]
Organism
ghc
Geoalkalibacter halelectricus
Brite
KEGG Orthology (KO) [BR:
ghc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghc03019
]
L9S41_06615
Messenger RNA biogenesis [BR:
ghc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
L9S41_06615
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
HD
tRNA_anti-codon
TraI_2
HDOD
tRNA_anti_2
Cas3_HD
Motif
Other DBs
NCBI-ProteinID:
UWZ81061
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All DBs
Position
1489067..1490254
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AA seq
395 aa
AA seq
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MKQVFVENVQERDWVESPFLVRDKVMAMAKNGKPYMTLKLMDRTGEIEGRVWDRVDEFAT
RFEKDDFILARGKASVYLGKMQLVVQDLERLSDEQVELSDFLPVSTRSPEEMESELLAKV
ASLRDGFIRRLLESFFADPEFLRRYRTAPAAKAMHHVYLGGLLEHSLAVANLVDDICRRY
PGLNHDLLVAGALLHDVGKVEELCYERSFDYTDEGKLIGHIVIGVEMVDEKIRAIADFPR
RTATLLKHLLLSHHGQYEFGSPKRPKTIEAVILNFLDDLDSKINGVRTHMEREPDNQSGW
TAYHRLYDRYFFKHSFGDEAEGLPREAATPASDPPAAQGREIPPQTQVAAAKPQAPAAKT
GGKGGEQRSRGMSFTLGDQLRGKSLDLFSTEDDKE
NT seq
1188 nt
NT seq
+upstream
nt +downstream
nt
gtgaagcaggttttcgtggagaatgttcaggaacgcgattgggttgagagcccctttttg
gttcgcgacaaagtcatggccatggccaagaacggcaagccctacatgaccttgaagtta
atggaccgcaccggcgaaatcgagggtcgggtgtgggaccgggtggatgaattcgcgacg
cgctttgaaaaggacgatttcatcctggcgcgcggcaaggcgagcgtctacctgggcaag
atgcagctcgtggtacaggatctggaacggctgagcgacgagcaggttgaactcagcgat
tttttgccggtcagcacccgttcgcccgaggagatggagagcgaactcctcgccaaggtg
gcctctctgcgcgatgggttcatccgccggttgctcgagagctttttcgccgatcccgaa
tttctgcgccgctaccggaccgcgcccgcggccaaggccatgcaccatgtgtatctcggc
ggtctgcttgagcacagcctcgcggtcgctaatctggtcgacgacatctgtcgccgctat
cccggactcaaccacgacctgctggtggccggggcgctgcttcatgatgtgggcaaggtg
gaggaactctgctatgagcgctccttcgactacaccgacgaaggcaagttgatcggtcac
atcgtcattggcgtggaaatggtcgatgagaaaatccgcgccatcgccgattttccgcgg
cgcaccgcgacgctactcaagcatctgctgctctcgcaccatgggcagtacgaattcggt
tcgcccaagcggcccaagaccatcgaagcggtgattctcaatttccttgacgatctggat
tccaagatcaacggcgtgcgcacccatatggagcgtgaaccggataatcaaagcggctgg
accgcctaccatcggctctacgaccgctactttttcaagcactccttcggcgatgaggcc
gaagggttaccccgtgaggctgctactcccgcctccgatcctccagcggcccaggggcga
gaaatccctccccaaacccaggtcgcagccgccaagccccaggcgccggcggcaaaaacc
ggcggcaagggcggtgaacagcgctcacgcggcatgagcttcaccctgggggatcaactg
cgcggcaaaagtctcgatctgttttccacggaagatgacaaggagtag
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