Geoalkalibacter halelectricus: L9S41_06930
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Entry
L9S41_06930 CDS
T09882
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
ghc
Geoalkalibacter halelectricus
Brite
KEGG Orthology (KO) [BR:
ghc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghc03019
]
L9S41_06930 (hrpB)
Enzymes [BR:
ghc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
L9S41_06930 (hrpB)
Messenger RNA biogenesis [BR:
ghc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
L9S41_06930 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
CON_HrpB
Flavi_DEAD
ResIII
Motif
Other DBs
NCBI-ProteinID:
UWZ81122
LinkDB
All DBs
Position
complement(1565841..1568363)
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AA seq
840 aa
AA seq
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MEKNLLPIDAVLPHLRQALGDQDAAVLQAAPGAGKTTRVPLALLDESWLAGRGILMLEPR
RLAASNAARYMAALLGEEVGETVGYAIRFERRVSPRTRIEVVTEGILTRRLQSDPSLEGV
GLVIFDEFHERNLHSDLALALCRDAQQGLREDLRLLVMSATLDAQPVSHLLGQAPLITSA
GRSHPLDIRYLNHNPQGSVAEYTARAVGRALEQTTGDILVFLPGAGEIRRCRDMLAQSLP
PGRVELCPLYGDMPFADQERAILPGARRKVVLATNIAETSLTIEGVRVVVDSGLARQTRF
DPAAGLTRLETVRVSAASADQRAGRAGRLGPGVCYRLWSPATQGGLLPFTPPEIRQADLA
QLALELARWGVGDPAELCWLDPPPAGALAGARDLLRELGALDRADRITAHGRALGDLGAH
PRLANLMLRGRSLGAARLGCELAALLAERDVLRGMGEAVQACDSDFIARLEVLRRNGRGN
SREAAQGAALRHAARAARHWHRRLGGGQDGAALSVDVLGRLLAAAYPDRVAQQRRPDSDR
YLLANGRGARLSRHSAVQTPPFLVAVEVLGVGGGEGEIRLASRLTRDLIEEEFAERLFWR
REVRWDEREERVVAREFLALGALELRERQVAPEPEEQAAALLVGLRRLGLEALGWTAQGR
DFRARVRFVAREDAEGDWPNLSDLALLEGLETWLGPFLQDARDRADLARLDPRPALESLL
DWPRLQRLNRLAPTHIEVPSGSRIRLDYSSEGPPVLAVKLQELFGLAETPRLVDGRVPVL
IHLLSPARRPLAVTQDLRSFWDNVYPEVKKELAGRYPKHPWPDDPWKATATRFTKRKTDS
NT seq
2523 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaaaatctcttgcccatcgacgcggttctgccgcacctgcgccaggcccttggc
gatcaggatgccgccgtactgcaggccgcgcccggggcgggcaagaccacgcgggtgccc
ttggcgctgcttgacgagtcctggctggcggggcgcggcatcctgatgcttgaaccccgg
cgcctggcggccagtaacgcggcgcgctacatggccgcgctcctgggcgaggaggtcggc
gagacggtcggctacgccattcgcttcgagcgccgtgtttcgccgcgcacccgcatcgag
gtggtgaccgagggcattctcacgcgacgtctgcaatccgacccctccctggagggggtg
ggactggtcatcttcgatgaattccatgagcgcaatctgcactcggatctggccctggcg
ttgtgtcgcgatgcgcagcagggtttgcgcgaggatctgcgcctgttggttatgtcggcg
actctggatgcccagccggtgagccacttgctgggtcaggccccgctcatcaccagcgcc
gggcgcagtcatcctctcgatattcgctatctgaaccacaacccccaaggatccgtcgcg
gagtatacggcgcgcgccgttggccgcgccctggagcaaaccacgggcgatattttggtc
tttttgcccggcgcgggcgagatccgccgttgccgtgacatgctggcgcaatccctgccg
ccgggcagggtagagctttgtcccctgtacggcgatatgcccttcgccgatcaggagcgt
gccattttgcccggagcgcggcgcaaggtggtgttggccaccaatatcgccgaaaccagc
ctgaccattgaaggggtacgcgtggtggtcgatagcgggttggcgcgtcagacacgcttc
gacccggccgccgggctgacgcgcctggaaacggtgcgggtatccgcggcctcggccgat
cagcgggcggggcgcgccgggcgcctggggccgggggtgtgctatcgcctgtggagtcct
gcgacgcagggcggcttgctgcctttcaccccgccggaaatccgccaggcggatttggcc
caactggccctggaattggcgcgctggggagtcggcgatccggctgaactgtgctggctt
gatccgcctccggccggtgccttggcgggggcgcgcgatttgctgcgtgaactcggcgcc
ttggaccgggccgatcgaatcaccgcccacggccgtgccctgggcgacctgggtgctcat
ccgcgcctggccaatctcatgctgcgggggcgctccctgggggctgcgcggctaggctgc
gaactggccgcgctgctcgctgaacgcgatgtgttgcgcgggatgggtgaggctgtccag
gcgtgcgattcggatttcatcgcgcgccttgaggttctgcgccgaaacgggcgcggcaat
tcgcgggaggcagcccagggcgcggctcttcgtcacgccgcgcgcgcggcgcgccattgg
caccggcggctcggcggcgggcaggacggggcggctctgtccgtcgatgtgctggggcgg
ttgctggcggccgcctatcccgaccgagtggcgcagcaacgccggccggactcggatcgg
tacctgctggccaacggccgcggggcgcgcctgtcacgccattcagccgtgcaaacgccg
ccctttctggtggccgtcgaggtgctgggcgtagggggcggtgaaggggaaattcgtctg
gccagccgcttgacgcgcgacctcattgaggaagagttcgccgagcgtttgttctggcgc
cgtgaggtgcgctgggatgagcgtgaggagcgggtcgttgcccgggagtttttggccctg
ggagcgttggagttgcgcgagcgccaggttgcgcccgagcccgaggagcaggcggcggct
ttgttggtgggattgcgccggctgggcctggaggctctgggttggacggcgcaggggcga
gactttcgcgcccgggtgagattcgtggcgcgcgaggacgccgagggtgattggccgaat
ctctcggacctggccctgttggagggcctggaaacctggttgggcccgtttctccaagac
gcccgcgaccgtgccgatttggcgcgtctggatccgcggccggccctggaaagcctgctt
gactggccgaggctgcaacggctgaaccgcttggcgccgacacacatcgaggttcccagc
ggctcgcgaattcggctggattactccagcgaggggccgccggtgctggcggtcaaactt
caggaactcttcgggctggccgaaacgccgcggctggtcgacgggcgggtgccggtcctc
attcacctgctctccccggcccgccggcccctggccgtgactcaggatctgcgcagtttt
tgggacaatgtctatccggaagtcaaaaaagagcttgccggacgctaccccaagcacccc
tggcccgacgatccctggaaggccacagccacccgtttcaccaaacgcaagaccgattcg
tag
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