Geoalkalibacter halelectricus: L9S41_07600
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Entry
L9S41_07600 CDS
T09882
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ghc
Geoalkalibacter halelectricus
Pathway
ghc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ghc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
L9S41_07600
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghc03019
]
L9S41_07600
03009 Ribosome biogenesis [BR:
ghc03009
]
L9S41_07600
Enzymes [BR:
ghc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
L9S41_07600
Messenger RNA biogenesis [BR:
ghc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
L9S41_07600
Ribosome biogenesis [BR:
ghc03009
]
Prokaryotic type
rRNA processing factors
L9S41_07600
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
UWZ81244
UniProt:
A0ABY5ZUB8
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All DBs
Position
1716560..1719070
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AA seq
836 aa
AA seq
DB search
MSRKMLINATHAEEHRVAIVEDGFLTELDIEITGKEQTKGNIYKAVVVRVESGLQAAFVD
YGGERLGFLQIGEIHPSLLPGSDGNGRSRPRINEILRPGQEILVQVLKEERGTKGAALTT
YLSLPGRYMVLMPESPTKGVSRKIEEEAERKKLKKAMAELDLPENMGYIVRTAGIGKPPE
ELRRDFDNLVKVYQGIQERSRQAKAPSLVYRESNLIIRCIRDYFTEDTEEVLVDDPTVFE
EAREFFRMLMPDKVRLVKLHQERRPIFSRYQIEEQIETIAHNKVPLPSGGSIVLDATEAL
VAIDVNSGKMAGEQGIEGTATRTNLEAAVEIARQLRLRDLAGLVVIDFIDMRDRKNIRAV
EKALRDALKRDKSRVTVGRISQFGLLEMSRQRLKPMLAAASFLECPHCQGRGRVKSVEAQ
GVAFMRRIQTAVAKGQVRRAEGFLPLDVADYLLNYKREDLTAMENRYDMEIILHGRAGLL
SHQADLTLVKREREEEPRGRMELEPVEPVELLIEAQEPAPAAEPKPASASEEVAPPQLAE
EEEKPAKKKRRRRRRKKATPGETAAAAAPEAGGTPPEQAPVPEPEAAAETASEQAPAEPK
AEPKAEPKAEPKAEPKAEPKAEPKAEPKAEPNAEPKAEPKAEPKAEPKAEPKAKARPRRR
KKTEAAAQSGGGEPSSTTAEQQPLETPASIQAPPPVEMASVDTQAPVKSPTKRPRRAAPK
KAAAQKQVDAAQLSSASGTEDNTATPPAPAIDKDVVQAPEDKPKTPRKRKSTPAKKPAKA
QADAASADEAPAAQTGASSSAVETPTKPPAKRTSSARKKPAAKRTKDPKPPQPEDS
NT seq
2511 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgtaagatgctgatcaacgccacccatgccgaggagcatcgggtggccatcgtc
gaggacggctttctgaccgaactcgacatcgaaatcaccggcaaggaacaaaccaagggc
aacatctacaaagcggtggtggttcgcgtggaaagcggcctgcaagccgcttttgtcgat
tatggcggcgaacgcctgggctttttacagatcggcgaaattcatcccagcctccttccc
ggcagcgacggcaacgggcgcagccgcccgcgcatcaacgaaatcttacgtcccggccag
gaaatcctggtgcaggttctcaaggaggaacgcggcaccaagggcgcggccctcaccacc
tatctctccctgccgggccgctacatggtgctgatgcccgaaagcccgaccaagggcgtc
tcgcgcaagatcgaggaggaagccgagcgcaagaaactcaaaaaagccatggcggagctc
gatctgcctgaaaacatgggctatatcgtgcgcactgccggcatcggcaaaccacccgag
gagttgcgtcgcgacttcgataacctggtcaaagtctatcagggcatacaggagcgcagc
cgccaggccaaggctcccagcctggtgtaccgcgaatccaacctgatcatccgctgcatt
cgcgattatttcaccgaagacaccgaggaggttctggtcgacgatcccaccgtttttgag
gaagcgcgcgaattcttccgcatgctcatgccggacaaagtgcgcctggtcaaactccac
caggaacgccgcccgatcttttcccgttatcagatcgaggaacagatcgagaccatcgcc
cacaacaaggtgcctctgccttcgggcggctccatcgtcctggatgccaccgaagccctg
gtggccattgatgtgaattccggcaaaatggccggcgagcagggtatcgaggggaccgca
acccgcaccaacctggaagccgcggtggagatcgcccgccagttgcgcctgcgcgacctc
gccggcctggtcgtcatcgacttcatcgacatgcgcgaccgcaagaacatccgcgcggtg
gaaaaggccttgcgcgacgccctcaagcgcgacaagtcgcgggtcaccgtgggccgtatc
agccagttcggcctgctggaaatgagccgccaacgcctcaaacccatgcttgcggcggcc
tcctttctggaatgcccccattgccaggggcgcggacgcgtcaaaagcgtcgaagcccag
ggggtcgcgttcatgcgccgtatccagaccgccgtggccaagggccaggtgcgccgtgcc
gaaggatttctgcccctcgatgtcgccgattatctgctcaactacaagcgcgaggatctc
accgccatggagaaccgctacgacatggagatcattctccatggccgtgccggactgctc
agccatcaggccgatctgaccctggtcaagagggaaagggaagaggaaccgcgcggcaga
atggaacttgagccggtggagccggtggaactgttgatcgaggcgcaagaaccggcccct
gccgccgaacccaagcccgcctcggcaagcgaggaagtcgcacctccccagctcgccgag
gaagaggaaaagcccgcgaaaaagaaacgcagacgtcgccggcgcaaaaaagcgacccct
ggtgaaaccgcagcggccgccgccccggaagccggcggaactcctcccgagcaggctccc
gtgccggagcctgaggctgcggccgagaccgcttcggagcaggcaccggccgagcccaaa
gccgagcccaaagccgagcccaaagccgagcccaaagccgaacccaaagccgaacccaaa
gccgaacccaaagccgaacccaaagccgaacccaacgccgaacccaaggccgaacccaag
gccgaacccaaggccgaacctaaggccgaacccaaggccaaggcacgaccgcggcggcgc
aaaaaaaccgaagctgcagcccaatccggtggcggcgaaccatccagcaccaccgccgag
caacagcccctggagacgccagcgtctatccaagcgcctccccctgtggaaatggcttcc
gtggacacccaggcgccggtcaagtcaccgaccaagcgcccgcgccgtgcagcgccgaaa
aaagcagcagcccagaaacaagtggatgccgcacagctctcttcggcatccggcacagag
gacaacaccgcgacacccccagcgcccgccatcgataaagatgtcgttcaagcgccggag
gacaagcccaaaacaccgcgtaagcgcaaaagcaccccggccaagaaaccggccaaggcg
caagccgatgccgcgagcgcagatgaggcaccagccgcccaaaccggcgcatcctcatcg
gccgtggagaccccgaccaagccgcccgccaagcgcaccagttccgcgcgtaaaaaaccc
gcggccaagagaaccaaggatccaaaaccccctcagcccgaggattcctag
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