Geoalkalibacter halelectricus: L9S41_08600
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Entry
L9S41_08600 CDS
T09882
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
ghc
Geoalkalibacter halelectricus
Pathway
ghc02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ghc00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
L9S41_08600 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ghc03021
]
L9S41_08600 (rpoD)
Transcription machinery [BR:
ghc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
L9S41_08600 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
Isochorismatase
LMBR1
DUF1993
Motif
Other DBs
NCBI-ProteinID:
UWZ81439
LinkDB
All DBs
Position
complement(1939573..1941327)
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AA seq
584 aa
AA seq
DB search
MSKKTKMDEVQQLIDLGREKGFLTYDEVNDLLPADMVSSDQIDDVMSMFGELDIEIVDAD
QKIALPKERGLEDDDSEGAEEEEPDLEAELGRTSDPVRMYLREMGQVSLLTREGEVEIAK
RIEEGEALVTKVILRTPIAFKEVITLGERLEKGQISVAEITKEFEEEEGSEQEEKQVQRV
QELVGRIRELDVQFMEGREKLAGEIPRDEKKELEQTARQLKNDIFELLRQIRLKDHQVAK
IVDRLKELAAQVKKGMVEVTACEQELKKPHKDIKKLLRRMRKSDEEALAVSAELGVPMDT
LLAVEKRLKAAQRKFKKVEEESGFAPEELLEALKDVQKGEFRAKLAKTELVEANLRLVVS
IAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYQRGYKFSTYATWWIRQAITRAIADQART
IRIPVHMIETINKLIRTSRQLVQEMGREPTPEEIAERMELPLEKVRRVLKIAKEPISLET
PIGEEEDSSLGDFIEDKAVVSPVEAVIKSNLSDQTSRVLSTLTPREEKVLRMRFGIGEKS
DHTLEEVGQDFNVTRERIRQIEAKALRKLRHPSRSKRLKSFVEY
NT seq
1755 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaaaagaccaaaatggatgaagttcaacagttgatcgacctgggccgcgaaaag
ggattcttgacctatgacgaggtcaatgacctgctgcctgccgatatggtgtcgtcggat
cagatcgacgacgtcatgagcatgttcggcgaactcgacatcgagatcgtcgatgccgac
cagaagatcgccctgcccaaggagcgcggcctcgaggatgatgacagcgaaggcgccgag
gaggaagagcccgatctggaggccgaactcgggcgcacctccgatccggtgcgtatgtat
ctgcgggaaatggggcaggtgagtctgctgacccgcgaaggcgaggtggaaatcgccaag
cgcatcgaggagggcgaggccctggtcaccaaggtcattctgcgcacccccatcgccttc
aaggaagttatcaccctgggcgagcgcctcgaaaaaggccagatcagcgtggccgaaatc
accaaggaattcgaggaggaagagggcagcgagcaggaggaaaagcaggtgcagcgcgtt
caggagctggtcggccgcattcgtgagctggacgtacagttcatggaggggcgcgaaaag
ctcgccggtgagattccgcgcgacgagaaaaaggaactcgagcaaaccgcgcgccagctc
aagaacgacattttcgagttgctgcggcaaatccgcctcaaggatcatcaggtggccaag
atcgtcgatcgcctgaaggagctcgccgcgcaggtgaaaaagggcatggtggaagtcacc
gcctgcgagcaggagctgaaaaaaccgcacaaagacatcaagaagctgctgcggcgcatg
cgcaagagcgacgaggaggccctggcggtctcggccgaactcggggtgcccatggacacc
ctgctggcggtggagaaacgcctcaaggccgcccagcgcaaattcaagaaggtcgaggag
gaatcgggcttcgcgcccgaggagttgctcgaagcgctcaaggacgtgcaaaagggcgag
tttcgcgccaagctcgccaagaccgagctggtcgaggccaacctgcgactggtggtctcc
atcgccaagaaatacaccaatcgcggcctgcagtttctcgacctcattcaggagggcaac
atcggcctgatgaaggcggtcgacaagttcgagtaccagcgcggctacaagttctccacc
tacgccacctggtggattcgccaggccatcacccgcgccatcgctgatcaggcgcgcacc
atccgcattccggtgcacatgatcgagaccatcaacaagctcatccgcaccagccgccaa
ctggtgcaggaaatgggacgcgagcccacgcccgaggagatcgccgagcgcatggagctg
cccctggaaaaggtgcggcgcgtgctcaagatcgccaaggagcccatttccctggaaacg
cccatcggcgaggaggaagattcctccctgggcgatttcatcgaggacaaggcggtggtt
tcgccggtggaggcggttatcaagagcaacctctccgaccagacttcgcgcgtgctctcg
accctgacgccgcgcgaggagaaggtgctgcgcatgcgcttcggcattggtgaaaagtcc
gatcacaccttggaagaagtgggacaggatttcaacgtcacccgcgagcggattcgccag
atcgaggccaaggcgctacgcaagctgcgccacccgagccgctccaagcgcctcaagagt
ttcgtggagtattga
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