Geoalkalibacter halelectricus: L9S41_14900
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Entry
L9S41_14900 CDS
T09882
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
ghc
Geoalkalibacter halelectricus
Pathway
ghc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ghc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
L9S41_14900 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ghc03021
]
L9S41_14900 (rpoB)
03400 DNA repair and recombination proteins [BR:
ghc03400
]
L9S41_14900 (rpoB)
Enzymes [BR:
ghc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
L9S41_14900 (rpoB)
Transcription machinery [BR:
ghc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
L9S41_14900 (rpoB)
DNA repair and recombination proteins [BR:
ghc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
L9S41_14900 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
UWZ78955
UniProt:
A0ABY5ZM97
LinkDB
All DBs
Position
3263479..3267588
Genome browser
AA seq
1369 aa
AA seq
DB search
MAYSVANNQLLRKHFTEVARVIDIPNLIEIQKNSYKRFLQAELPPSARRNIGLEAVFRSV
FPIRDFSESCSLEYVSYGLGTPKYDVEECHQRGMTFAAPMKVKVRLVSWDVDKDSGVQSI
RDIKEQEVYFGEIPLMTDNGTFIINGTERVIVSQLHRSPGVFFDHDKGKTHASGKILYNA
RVIPYRGSWLDFDFDHKDIIWVRIDRRRKLPATVLLKALGYTAEELLNYYYDTEEIVWDG
DIYKKRVNVNLLLGQRADRDVVDAGGEVLVRESRKFTKAAVRKIADAGIEFIPLAEESVV
GKFVSTDIVDPATGEVIVECNDELTAPRLEELRKRGLNEFSVLFIDNLYVGPYLRETLLA
DKIAGSEEAIIEIFRRLRPGDPPTLKSATALFDSLFFNPERYDLSTVGRLKLNYKLGLDT
PLEHTTLTKEDILEVVRYLIDLRNGKGAIDDIDHLGNRRVRTVGELLENQYRIGLVRMER
AIKERMSLQDVDSLMPHDLVNSKPVSAVVKEFFGSSQLSQFMDQTNPLSEITHKRRLSAL
GPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLIASLSTYARINEYGFVETPYRI
VRDGLVSSEIKYFSALEEENHAIAQANAPLTEDNRFQNELVTARKNGEFIMANREDIELM
DVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLLRADAPLVGTGMERIVAHDSG
AAVVARHNGVVESVDASRIVVKIDEDEVDETGTGVDIYNLIKFARSNQNTCLNQKPIVRV
GDRVKRGDIIADGPSTEWGELALGQNVLVAFMPWEGYNFEDSILISEKLVKEDRYTSIHI
EEFECVARDTKLGKEEITNDIPNLGEDALANLDESGIIRIGAEVGPGDIMVGKITPKGET
QLSPEEKLLRAIFGEKAGDVRDTSLRVPPGVEGVVIGARVFSRKGADKDSRTEIIEKAEI
DKLLKDQDDEIRIIRNSARAKLRNILLGQTSAVTITDDKGNVLLGKGVRINEDALTRIPV
VRWGEVSLANGEDAEEKLAELLRRLRDREELIRGVFADKIEKIKRGDDLPPGVIKMVKVY
IAIKRKLQVGDKMAGRHGNKGVLSRVLPEEDMPYMADGTPVEIVLNPLGVPSRMNVGQIL
ETHLGLAARGLGLQIQAALDEKFGLDQIKERIKAGYDDKETSAFIDQLDEEDTLALARRL
SGGIPMASPVFEGVPEDQVKSTLSRAGLPTSGQVILHDGKTGEPFKEKVTVGIMYMLKLH
HLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRLGEMEVWAMEAYGAAHALQEFLTVKSD
DVAGRTRIYESIVKGKHTLEAGLPESFNVLIKELQALCLDVELLEEEEE
NT seq
4110 nt
NT seq
+upstream
nt +downstream
nt
atggcttattccgttgcgaataaccagcttctgaggaaacatttcaccgaggtggcgcgg
gttatcgatatccccaaccttatcgagatacagaagaattcctacaagcgtttcctccaa
gcggagttgcctccttcggctcgccgcaatatcggcttggaagccgtttttcgctccgtt
tttccaattcgggattttagtgaaagctgttcgctcgaatacgtttcctatggcctcggc
acgcctaagtatgacgtggaagagtgtcatcaacgcggcatgactttcgccgctccgatg
aaggtcaaggtgcggcttgtgtcctgggacgttgacaaggattccggggttcagtctatc
cgcgatatcaaggagcaagaggtctattttggggaaattcccctgatgaccgataatggt
acattcatcataaacgggacagaaagagtcatcgtcagccagttgcaccgctcacccggg
gttttcttcgaccacgacaagggtaaaacgcacgccagcggcaagatcctctataatgcg
cgcgtcattccctatcgcggttcctggctcgatttcgactttgatcataaagacatcatt
tgggttcgcatcgaccggcggcgcaagctgcccgcgacggtgctgctcaaggccctcggg
tacacggccgaggaactgcttaactactattatgacaccgaggagattgtctgggacggc
gacatctacaagaagcgcgtcaacgtcaatctgcttctcggacagcgggccgatcgcgac
gtggtcgacgccggcggagaggtgctcgttcgcgaaagccgcaaattcacaaaggccgcg
gtgcgcaagattgccgatgcgggcattgagttcattcccctggccgaggagagcgtggtc
ggtaaattcgtctccacggacatcgtggatccggccaccggcgaggtgatcgtcgagtgt
aacgacgagctgaccgcaccgcgccttgaggagcttcgcaagcgcggcctcaacgaattc
agcgtgctgttcatcgacaatctttatgtcgggccttacctgcgcgaaaccctgctggcc
gacaagattgccggcagcgaagaggcgatcatcgagatcttccggcgcctgcgtcccggc
gatccgccgaccctgaagagcgccacggctcttttcgacagtctgttcttcaatcccgag
cgctatgatctctccacggtgggacggctcaagctcaactataagctcggattggatact
cctctggagcacaccaccctgaccaaggaggatatccttgaggtggtgcgctatctcatt
gatctgcgcaacggcaagggcgccatcgatgatatcgatcatctcggcaaccgtcgcgtg
cgtaccgtgggtgagctgctggaaaaccagtaccgcatcggtctggtgcgcatggagcgc
gccatcaaggagcgcatgagcctgcaggacgtcgatagcctcatgccccacgatctggtc
aactccaagccggtgtcggcggtggtcaaggagtttttcggctcctctcagctgtcgcag
ttcatggaccagaccaatccgctctcggagatcactcacaagcgtcgtctctcggccctg
gggcccggtggtctgacccgcgagcgcgccggcttcgaggtgcgcgacgtgcatcccacc
cattatggccgggtgtgccccatcgagacgcctgaaggccccaacatcggtctgatcgcc
tcgctctctacctatgcgcgcatcaacgaatacggctttgttgaaacgccctaccgtatc
gtgcgcgacggcctggtgagcagcgaaatcaagtatttcagcgctctggaagaagagaat
catgccatcgcccaggccaacgcgcccctgaccgaggacaaccgcttccagaatgagttg
gtcaccgcgcgtaagaacggcgagttcatcatggccaaccgcgaggacatcgaactgatg
gacgtctcgcccaagcagttggtgtcggtcgccgcttcgctgattccgttcctggaaaac
gatgacgccaaccgtgctctcatgggctccaacatgcagcgccaggccgtgcccttgctg
cgggccgatgctcccctggtggggaccggcatggagcgcatcgtcgcccacgattccggg
gctgcggttgtggcacgtcacaacggcgtggttgaaagcgtcgatgcatcgcgcatcgtg
gtgaagatcgatgaagacgaggtcgacgagaccggcaccggagtcgatatttacaatctc
atcaaattcgcgcgctccaaccaaaacacctgccttaaccaaaagcccatcgtgcgggtc
ggtgaccgcgtcaagcgcggtgatatcatcgccgatggtccctcgacggagtggggtgaa
ttggccttgggacaaaacgtgctggtcgccttcatgccctgggaaggttacaacttcgag
gattcgattctgatctccgaaaagttggtcaaggaagaccggtacacctcgattcatatc
gaggaattcgagtgcgtggcccgcgacaccaaactgggcaaggaagaaatcaccaacgat
attcccaacctgggcgaagatgccctggccaatctcgatgagagcggcatcattcgcata
ggggccgaggtcggtcccggcgacatcatggtcggcaagatcacccccaagggcgaaacc
cagctttcgcccgaggaaaagctgctgcgcgccatcttcggtgaaaaagccggagacgtg
cgtgacacctcgctgcgggttccacccggagtcgagggcgtggtcatcggggcgcgggtt
ttttcgcgcaaaggtgccgacaaggacagccgcaccgagatcatcgaaaaagccgagatc
gataaactgctcaaggatcaggacgacgagatccgcattatccgcaactccgcccgcgcc
aagctgcgcaacattcttttgggccagacctcggccgtgacgattacggacgataagggc
aatgtcctgctcggcaagggcgtgcggatcaacgaggatgcgctgacacgcatccctgtg
gtgcgctggggggaggtctccctggccaacggcgaggacgccgaggagaagcttgccgag
ctgctgcggcggctgcgtgatcgcgaggaactgatccgtggcgtgtttgccgataaaatc
gaaaaaatcaagcgcggcgacgatctgccccccggcgtgatcaagatggtcaaggtctat
atcgccatcaagcgcaagctccaggtcggcgacaagatggccgggcgacacggcaacaag
ggtgttctgtcgcgggtgctgcccgaggaagacatgccctacatggctgacggaacgccc
gtcgagatcgttctcaatcccctcggcgtgccctcgcgtatgaacgtcggacagattctc
gaaacccacctcgggttggctgctcgtggccttgggcttcagatccaggccgccctcgat
gagaagttcggtctggaccagatcaaggagcgcatcaaggcaggctatgacgacaaggaa
accagcgccttcatcgatcagctcgatgaggaggataccctggcccttgcccgccgcctg
tccggcggcatccccatggcgtcccccgttttcgagggggtacccgaggatcaggtcaag
tccaccctgtcacgcgccggcctgccgaccagcggacaggtgatcctgcatgacggcaag
accggcgagcctttcaaggagaaggtcaccgtcggcatcatgtacatgctcaagctgcac
catctcgtcgacgacaagatccatgcgcgcagcatcgggccttacagcctggtcacccag
cagcccttgggaggcaaggctcagttcggcgggcagcggctcggcgaaatggaggtctgg
gccatggaggcctatggcgcggcgcacgcgctgcaggaatttctcaccgtcaagtccgac
gatgttgccggtcgtacccgtatttacgagtcgatcgtcaagggtaagcatacgctggag
gcgggtctccccgagtccttcaacgtgctgatcaaggagctgcaggcgctgtgcctcgac
gtcgaacttcttgaggaagaagaagaataa
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