Geoalkalibacter halelectricus: L9S41_14905
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Entry
L9S41_14905 CDS
T09882
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ghc
Geoalkalibacter halelectricus
Pathway
ghc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ghc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
L9S41_14905 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ghc03021
]
L9S41_14905 (rpoC)
03400 DNA repair and recombination proteins [BR:
ghc03400
]
L9S41_14905 (rpoC)
Enzymes [BR:
ghc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
L9S41_14905 (rpoC)
Transcription machinery [BR:
ghc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
L9S41_14905 (rpoC)
DNA repair and recombination proteins [BR:
ghc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
L9S41_14905 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
TyeA
Motif
Other DBs
NCBI-ProteinID:
UWZ78956
UniProt:
A0ABY5ZJQ0
LinkDB
All DBs
Position
3267615..3271772
Genome browser
AA seq
1385 aa
AA seq
DB search
MEDIFSLFESPKDPLSFNAIRLSVSSPDKIRERSFGEVKKPETINYRTFKPERDGLFCAK
IFGPTKDYECNCGKYKRMKHRGIVCEKCGVEVIPSKVRRERLGHIDLACPVAHIWFLKSL
PSRIGTLLDMTLKELEKVLYFEAYVVLDGGDTGLQAGQLLTEDKYREAMEEFAGQFSASM
GAEGIRELLSGLDLESLSVDLRQEMREAASEAKRKKTAKRLKVVEAFRASGNRPEWMILE
TIPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPEVIIRNEKRMLQ
ESVDALFDNGRRGRAITGPNKRPLKSLSDMLKGKGGRFRQNLLGKRVDYSGRSVIVVGPE
LKMHQCGLPKKMALELFKPFIYNKLEERGYCTTIKSAKKLVEKEKPEVWDVLDEVIKEHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHLPLSIESQLEA
RVLMMSTNNILSPANGKPIIVPSQDMVLGLYYMTRERAFAKGEGRLFSNPEEVRIAYDAG
EADLQARIKVKLALYPGESPRMVETTVGRVLLHEIVPPAIGFEAINRVFGKKQVGELIDI
CFRVCGNKDTVILADRLKETGYRFSTHAGISICLDDMVIPAAKEERIGKAVEEVKEIQQQ
YTEGLITDGERYNKVIDIWAKCTEDIAQTMLTNLSVDVLTSEEGETVKVPSFNAIHMMAD
SGARGSAQQIRQLAGMRGLMAKPSGEIIETPITANFREGLTVLQYFISTHGARKGLADTA
LKTANSGYLTRRLVDVAQDAIITEEDCGTMDGISIASLTEGGEIIEPLGDRILGRVALED
VLDPMTGEVLVEANREIDESLVEKVEASGLERIKIRSVLTCQSRRGICALCYGRDLARGH
MVNLGEAIGVIAAQSIGEPGTQLTMRTFHVGGTASRRAEQTTLEARFEGTLRYIKLSTVV
DEQGHHVVMNRNGEIAVVDETGRERERYGVVYGAKLPIADGGEVKPGSLLAEWDPYTIPV
LTEIGGRVRFGDLIEGVTMEEQLDEVTGLSRKVVIESKDPDKRPRITLKDESGKTIKLPN
GAPARYMLPVGANITVSDDALAKAGGVLAKIPRETTKTKDITGGLPRVAELFEARKPKEF
AVIAEIDGIVSFGKDSKGKRKVIVTPEFGEPKEYLIPKGKHISVHEGDHVRAGELLMDGS
SNPHDILRVLGEKELAKYLVDEVQEVYRLQGVKINDKHIETIVRQMLKRIRIKEVGDTKF
LLDDQVDRYEFEEENNRALAEGKQPAVGEPLMLGITKASLSTESFISAASFQETTKVLTQ
AAIEGKIDFLRGLKENVIMGRLIPAGTGVSKYRAAKLLIEEPVEVEQPFDLDDVDESGEE
EILGE
NT seq
4158 nt
NT seq
+upstream
nt +downstream
nt
ttggaagatatcttcagcctttttgaaagcccgaaggaccccttgagcttcaatgccatt
cgactctcggtgtcatcgccggataagattcgggagcgctccttcggtgaagtcaaaaag
cccgaaacgataaattaccgcaccttcaagcccgagcgcgacggactgttctgcgccaag
atcttcgggccgaccaaggactacgagtgcaactgcggtaaatacaagcgcatgaagcac
cgcggcattgtctgcgagaaatgcggcgtcgaggtcattcccagcaaggtgcgccgcgag
cgtctcgggcatatcgacctggcctgccccgtggcccacatctggtttttgaagtctctg
ccttcgcgcatcggaaccctgcttgacatgactctcaaggagttggagaaggttctgtat
ttcgaggcctacgtggttctcgacggtggggataccggactgcaggccgggcaattgctg
accgaggacaaatatcgtgaggcaatggaggaattcgccgggcagttttccgccagcatg
ggcgccgagggcattcgcgaactgctcagcgggcttgaccttgagagcctgtccgtggat
ttgcgccaagaaatgcgtgaggcggcgagcgaagccaagcgcaagaaaacggccaagcgt
ctcaaggtggtagaggcctttcgcgccagcggcaatcggcccgagtggatgatcctggaa
accattccggtgctgccgccggagttgcggcctctggttcccctggatggcggacgcttc
gccacctcggacctcaacgacctctatcgccgcgtgattaaccgcaacaaccggctcaag
cggcttattgaactgcgcgcgccggaagtcatcattcgcaatgaaaagcgcatgctgcag
gaatcggtcgatgcgctgttcgacaacggccgtcgtgggcgtgccatcaccggacccaac
aagcggccgctgaaatcgctctccgacatgctcaagggcaagggtggacgcttccgccag
aatctgctcggcaagcgcgtggactactcggggcgctcggtcattgtcgtcggccccgag
ctcaagatgcaccagtgcggcctgccgaagaagatggccctggaactcttcaagcccttc
atctacaacaagcttgaggagcgcggctactgcaccaccatcaagagcgccaaaaagctg
gtcgagaaggaaaaacccgaggtctgggacgtgctcgatgaggtgatcaaggaacatccg
gtcatgctcaaccgtgcgccgaccctccatcgtctcggcattcaggcctttgagccggtg
cttatcgaaggaaaggccatccagttgcatcctttggtgtgtaccgcgttcaacgccgac
ttcgacggcgaccagatggccgtgcatctgcccctttccatcgagagtcagctcgaagcg
cgggtgctgatgatgtcgaccaacaacattctctcgccggccaacggcaagccgatcatc
gttccctcccaggacatggttttgggactttactacatgacccgcgagcgcgccttcgcc
aagggcgaggggcgcctgttcagcaatcccgaagaagtgcgcatcgcctatgatgccggc
gaagccgacctgcaggcgcgcatcaaggtcaagctggcgctgtaccccggcgaatcgccg
cggatggtcgagaccaccgtcgggcgggtgctcttgcatgaaatcgtgccccccgccatc
ggttttgaagcgatcaaccgggtcttcggcaagaagcaagtcggcgaactcatcgatatc
tgctttcgtgtctgcggcaacaaggacacggtcattctcgccgaccgcctcaaggaaacc
gggtatcgcttctccactcatgccggtatttccatctgcctggatgacatggtcattccc
gcagccaaggaagagcgcatcggcaaggcggtcgaggaggtcaaggaaattcagcagcag
tataccgaaggtctcattaccgacggggagcgctacaacaaagtcatcgatatctgggcc
aagtgcaccgaggatatcgcccagaccatgctcaccaatctctccgtggatgtcctgacg
tccgaggagggtgaaaccgtcaaggtgccgtccttcaacgccattcacatgatggctgac
tccggtgcccgcggcagcgcccagcagattcggcagttggccgggatgcgtggcctgatg
gccaagccatccggggagattatcgaaacgccgattaccgccaacttccgcgaaggcctt
acggttctgcagtacttcatctcgacccacggggcgcgcaagggcctcgccgatacggcg
ctcaaaaccgccaactcggggtacctgacccgccgcctggtcgatgtcgctcaggatgcc
atcatcaccgaggaagattgcgggacgatggatggtatttccatcgcatcgctgaccgag
ggcggtgagatcatcgagcccttgggcgaccgcattctgggccgcgttgcccttgaggat
gtgcttgatcccatgaccggagaagtgctggtcgaggcgaatcgggaaatcgatgagagc
ctggtggaaaaggtcgaggcgtccggactggagaggatcaagatccgctcggtgctcacc
tgtcagagccggcggggtatttgcgccctgtgttatgggcgtgatttggcccgcggccac
atggtcaatctcggtgaagccatcggggtcatcgctgcgcagtccatcggcgaacccggc
acccagctcaccatgcggaccttccacgtcggtgggacggcctcgcgccgcgccgagcag
acgacccttgaagcacgcttcgagggtaccctgcgctacattaagctcagcaccgtcgtc
gacgagcaggggcaccacgtggtcatgaaccgcaacggcgaaatcgccgtggtcgatgag
accggacgcgagcgggaacgctatggtgttgtttatggggcaaaacttcccatcgccgat
ggaggcgaggtcaagcccggctcgctgcttgccgagtgggatccctataccatcccggtg
ctcaccgagatcggcggccgggtgcgtttcggcgacctgatcgagggcgtcaccatggaa
gagcagcttgatgaggtgaccggtctttcccgcaaggtggtcatcgagtccaaggatccc
gacaagcgtccgcgcattaccctcaaggacgaatccggtaagaccattaagctgcccaac
ggtgctccggcgcgctacatgctgccggtgggggccaacattaccgtctccgacgatgcg
ctggccaaggccgggggcgttctggccaagattcctcgcgagaccaccaagaccaaggac
atcaccggcggtctgccgcgcgttgccgaactcttcgaggcgcgcaagcccaaggagttt
gcggtcattgccgaaattgacggtattgtttcctttggtaaggactccaagggcaagcgc
aaggtcatcgtgacgccggaattcggcgagcccaaggagtatttgattcccaagggcaag
cacatcagcgtgcacgaaggcgaccatgtgagggccggcgaactactgatggacggctcc
agcaatccccatgacattctgcgcgttctgggtgaaaaggagctggccaagtatcttgtc
gacgaggttcaggaggtctatcggctccagggcgtcaagatcaacgacaagcacatcgag
accatcgtgcgccagatgctcaagcggattcgcatcaaggaggtcggtgataccaagttc
ctccttgacgaccaggtggaccgctacgaattcgaggaggaaaacaatcgcgccctggcc
gaaggcaagcaacctgccgtcggcgagccgctgatgctcgggatcaccaaggcgtcgctg
tccacggaatccttcatttcggcggcttccttccaggagacgaccaaggttctgacccag
gccgcgattgaaggcaagatcgactttttgcgcggcctcaaggaaaacgtcatcatgggc
cggctgattcctgccggcaccggcgtctcgaagtaccgtgcggccaagctgctcatcgag
gagccggtcgaggtcgagcagccctttgacctcgatgacgtcgatgaatccggcgaagag
gagattcttggcgaatag
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