Geoalkalibacter halelectricus: L9S41_15115
Help
Entry
L9S41_15115 CDS
T09882
Name
(GenBank) DEAD/DEAH box helicase
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
ghc
Geoalkalibacter halelectricus
Pathway
ghc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ghc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
L9S41_15115
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghc03019
]
L9S41_15115
Enzymes [BR:
ghc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
L9S41_15115
Messenger RNA biogenesis [BR:
ghc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
L9S41_15115
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
SNF2-rel_dom
AAA_22
AAA_11
Motif
Other DBs
NCBI-ProteinID:
UWZ78997
LinkDB
All DBs
Position
3298629..3299903
Genome browser
AA seq
424 aa
AA seq
DB search
MKFTELDLPPEVLKGIEAVGFTDLTQVQEESIPLALAGHDVTGQAQTGTGKTAAFLISLF
TRMLRQPRQTGSDPRALILAPTRELVAQICEDAKGLGAFVPFKVQPIFGGIDYQKQRDAL
RGGVDVIVATPGRLIDYAKQKVFSFGRIEFLVIDEADRMFDMGFIKDLRFILRRLPSFEQ
RQTMLFSATMSHRVRELAYEFMNVAERVEVEPEQVTAERVEQILFHVSRREKFPLLLGLL
AKEAQSHRVLIFVNTKREAEHLTERLRVNDFRAAVISGDIPQQKRMRILTEFKKGLLRFL
VATDVASRGIHVDEVTHVVNYDLPQDPEDYVHRIGRTARAGAAGKAISLADEELVLHLGD
IEEYLGRRIPSAIPGEDDFVWDYKRPHPRKKAPVPEKAAAPGERKRPRRRRPRRKPSGGE
PAPS
NT seq
1275 nt
NT seq
+upstream
nt +downstream
nt
atgaaattcacagaactcgacctgccaccggaggtgctcaagggcatcgaggcggtcggt
tttaccgacctgacccaggtgcaggaagaatccattcccctggctttggcaggacatgat
gtcaccggccaggcccagaccggtactggaaaaaccgccgcctttctcatctcgctgttc
acccgcatgctgcgtcagccgcggcaaacgggcagcgatccgcgtgccttgatcctggcg
ccgacgcgcgagttggtcgcgcagatctgcgaggatgccaaggggctgggtgcttttgtc
ccgttcaaggtgcagcccattttcgggggcatcgactatcagaaacagcgcgacgctctg
cgcggcggggtagatgtcatcgtggcaaccccgggacggcttatcgactacgccaaacag
aaggtctttagtttcgggcgcattgaatttctggttatcgatgaagccgaccgcatgttc
gatatgggctttatcaaggatcttcgtttcatcctgcggcgcctgccctcctttgagcag
cgccagaccatgcttttttccgccaccatgtcgcatcgggtgcgcgaactggcctatgag
ttcatgaatgtcgccgagcgcgtcgaggttgaacccgagcaggtcacggccgagcgcgtc
gagcagattctcttccatgtttctcggcgggagaaattccccctgctgctcggcctgctg
gccaaggaagcgcagagccatcgcgttcttatctttgtcaacaccaaacgcgaggctgag
catctgaccgagcgactgagggtcaacgattttcgcgccgcggtgatttccggtgacatt
ccgcagcaaaagcgcatgcggatattgaccgaattcaaaaaggggctgctgcggtttttg
gtggcgacggacgtggcctcgcgtggcatccacgtggacgaggtcacgcacgtggtcaat
tacgatcttccccaggaccccgaggactatgtgcatcgcattggtcgcaccgcgcgggcc
ggcgcggcgggcaaggccatctccctcgccgatgaggagctggttctgcatctcggcgat
atcgaggaatatctcggacggcgtattcccagcgccatccccggcgaggacgattttgtc
tgggactataagcgcccgcacccgcgcaaaaaagccccggttcccgaaaaggccgcggcg
cctggcgaacgcaagcgcccgcggcggcgccgcccgcggcgtaaaccttccggcggtgaa
ccggcgccatcctga
DBGET
integrated database retrieval system
