Gossypium hirsutum (upland cotton): 107886153
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Entry
107886153 CDS
T04793
Name
(RefSeq) probable pectate lyase 18
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi00040
Pentose and glucuronate interconversions
ghi01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
107886153
Enzymes [BR:
ghi01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
107886153
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Gene cluster
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Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
107886153
NCBI-ProteinID:
XP_016665485
UniProt:
A0A1U8HHF1
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Position
A03:complement(16697625..16699526)
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AA seq
449 aa
AA seq
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MFSLITPLNKAFNPLYKHPLLLNLPPPPCLTKQANKGKMARTMATAIPSLPLLFLFTFLL
LLPLLISSSPVQDPELVVQDVHRAINASRRNLGYLSCGTGNPIDDCWRCDPNWETNRQKL
ADCAIGFGKNAIGGRDGKIYVVTDSGDDDPVNPKPGTLRHAVIQDEPLWIIFARDMTIQL
KEELIMNSFKTIDGRGASVHIAGGPCITVQYVTNIIIHGLNIHDCKQGGNAMVRDSPRHY
GWRTISDGDGVSIFGGSHVWVDHNSLSNCKDGLIDAIHGSTAITISNNYMTHHDKVMLLG
HSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTIN
SQGNRFTAPNNRFSKEVTKHEDAPESEWKSWNWRSEGDLMVNGAFFIASGAGASSSYAKA
SSLGARPSSLVATITTNAGAHNCKKGSRC
NT seq
1350 nt
NT seq
+upstream
nt +downstream
nt
atgtttagtttaatcacgccattgaacaaggcttttaatcctctttataaacaccccctt
cttctcaacctccctccaccaccttgcctcacaaaacaagcaaacaaaggtaaaatggca
aggacaatggcaacggcgatcccttcacttcctcttctcttcctctttacatttctgctt
ctactcccacttctcatttcctcttcccctgttcaagaccctgagcttgtagtccaagat
gttcacagggccatcaatgcgtccaggaggaacctagggtatctctcctgtggaaccggc
aaccccattgatgactgctggagatgcgaccccaactgggagactaatcgccagaagcta
gctgattgtgccattgggttcggcaagaacgccattggcggaagagatggtaagatttat
gtggtcactgactcgggcgatgatgaccccgttaaccccaaaccagggacattacggcat
gcggtgattcaagacgaaccgttgtggatcattttcgctcgtgacatgaccattcagcta
aaagaagagctgataatgaactcattcaagaccatcgacggtaggggcgccagcgttcat
attgcagggggtccatgcattaccgttcagtatgtgaccaacattatcattcatggactc
aacatacatgattgtaaacaaggagggaatgctatggtgagggactccccacgtcactat
ggttggaggaccatatcagatggtgatggtgtgtccatcttcggtggtagccatgtttgg
gttgaccataactccttatcaaactgcaaagacggcttgattgacgctatccatggctcc
accgctatcaccatttccaacaattacatgactcaccatgataaagtcatgttattggga
cacagtgattcgtatactcaagacaagaacatgcaagtcactattgcctttaatcacttt
ggtgaaggccttgtccaaagaatgccacgatgtagacatgggtatttccacgtggtgaac
aatgactatactcattgggaaatgtatgccattggaggaagtgctaacccaacaataaac
agccaagggaatagatttactgcacctaacaacagattcagcaaagaggtgaccaaacat
gaggatgcaccggagagtgaatggaagagctggaattggagatcggaaggtgacctaatg
gtaaacggtgcattctttatcgcgtcgggtgctggcgcctcgtcgagctatgccaaggct
tcaagcttgggtgctaggccatcttcactagtggcaacgataacgaccaatgctggtgcg
cataattgcaaaaaaggttcacgttgttga
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