Gossypium hirsutum (upland cotton): 107886318
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Entry
107886318 CDS
T04793
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH15 chloroplastic
KO
K26077
ATP-dependent RNA helicase ISE2 [EC:
5.6.2.6
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ghi03041
]
107886318
Enzymes [BR:
ghi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
107886318
Spliceosome [BR:
ghi03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
107886318
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
DSHCT
DEAD
ResIII
DEXQc_Suv3
Helicase_C
AAA_22
AAA_16
Motif
Other DBs
NCBI-GeneID:
107886318
NCBI-ProteinID:
XP_016665705
UniProt:
A0A1U8HI20
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All DBs
Position
A05:complement(73875297..73882014)
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AA seq
1177 aa
AA seq
DB search
MNTLSILTLPSLFRQTKHSQFPHFRCISQSLPFPRPSSIFSPLSFRLSFKSPRSPFSAEP
QLFDEELEDDEDDDDFEAADEYDEYEDISGEVSDHVQPSEDEDEDDTENEKEISVDSSNW
QKESTWQRVEKLCNLVKELGEEMIDVDALADIYDFRIDKFQRMAIEAFLRGSSVVVSAPT
SSGKTLIAEAAAVATVARRRRLFYTTPLKALSNQKFRQFRETFGDNNVGLLTGDSAVNKD
AQILVLTTEILRNMLYNSVGMASSGSGLFHVDVIVLDEVHYLSDISRGTVWEEIVIYCPK
EVQLICLSATVANPDELAGWISQIHGKTELVTSSWRPVPLTWHFSTKASLFPLLNEKGTH
MNRKLSLNYLQLSASGVNSYRDDGSRRRNYRDDGSRRRNSRRHGRNGSFDSIVGMSEQPL
SKNDKNMIRRSQVPQVVDTLWQLKAKDMLPAIWFIFNRRGCDAAVQYVEDCSLLDECEMS
EVELALKKFQLLYPDAVRETAVKGLIRGVAAHHAGCLPLWKSFVEELFQRGLVKVVFATE
TLAAGINMPARTAVISSLSKRTSTGRIQLSPNELLQMAGRAGRRGIDERGHVVIVQTPYE
GAEESCKLLFSGVEPLVSQFTASYGMVLNLLGGAKVTRHSNESDETNTLQARRTLEEARK
LVEQSFGNYLGSNVMLAAKEELAKIQKEIEALTYEISDEAIDRKSRKLLTEVAYKEIADL
QEELRAEKRVRTELRRRMELKRFSALKPLLKDFENGHLPFICLQYKDSEGVENFVPAVYL
AEVESLDGSKLKNMVSVDDSFALSSVGTSDTHQDVEPAYYVALGSDNSWYLFTEKWIKTV
YRSGFPNVALTQGEALPREIMRTLLKKEETQWEKLADSELGGLWCIEGSLETWSWSLNVP
VLSSLYESDEVLHMSQEYIESVERYREQRNKVARLKKKIARTEGFREYKKILDTAKFTEE
KIKRLKARSNHLINRIEQIEPSGWKEFLQISKVIHETRALDINTHVIFPLGETAAAIRGE
NELWLAKVLRNKILLELKPAELAAVCASLVSEGIKVRAWKNNNYIYESSPTVLNVISLLE
EQRNSFVQLQEKHEVEIACCLDGQFSGMVEAWASGLSWRELMMDCAMDEGDLARLLRRTI
DLLAQIPKLPDIDTLLQKNATTASDVMDRPPISELTG
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atgaacactctctcaatcctcactcttccttctctattccgacaaaccaaacactcccaa
ttccctcacttccgctgcatttctcaatccctacctttccctcgcccttcttccatcttc
tctccgctttcttttcgtctctctttcaaatcccctcgctctcccttctccgctgagccc
caactctttgacgaggaactcgaagatgacgaagacgacgatgattttgaagctgcggat
gaatacgacgaatacgaagacatttccggtgaagtttccgaccatgtccaaccgagcgaa
gacgaagatgaagacgataccgaaaacgaaaaagaaatctcagtggattcatccaactgg
cagaaagaatccacttggcaacgagttgaaaagctttgtaatctagttaaggaattgggg
gaggaaatgattgacgtcgatgcactcgctgatatttacgattttcgcattgataaattt
cagagaatggcaatagaagcgtttttaaggggttcgtctgtggtggtttcagcgcccacc
agcagcggaaagactttaattgcggaagctgctgccgtggcgacggtagccaggaggagg
aggttattctatacaaccccgcttaaggcattatccaatcaaaagtttcgacagtttagg
gagacatttggggataataatgtgggccttctcacaggagattctgctgtcaacaaggat
gctcagattttagtcttgactacagagattctgcggaacatgttgtataatagtgttgga
atggcttcttctgggagtggtctttttcatgttgatgtgattgttcttgatgaggttcat
tatttaagtgacatatctcggggtactgtgtgggaggagattgtgatttattgccctaaa
gaagttcaacttatatgcctgtcagcgacagttgctaatccagatgagttagctggttgg
attagtcagattcatggtaaaacagagctggtaacatcatcatggcgtcccgttccattg
acttggcacttctcaacaaaggcctctttatttccgcttcttaatgaaaagggaacacac
atgaataggaagttgtcactcaattatttacaactttctgcttcaggagtcaactcgtac
agggatgatggatctagaagaaggaattacagggatgatggatctagaagaaggaattca
cgaagacatggaagaaacggtagctttgatagtatagttggcatgtctgagcagcctctt
tcaaagaatgacaaaaacatgattcgccgttcacaggttcctcaagttgttgatacacta
tggcaactcaaagcaaaggacatgcttccagcaatttggtttatttttaataggagaggc
tgtgacgcagctgtgcagtatgttgaagattgtagccttttggatgagtgtgagatgagt
gaggtagaacttgcattgaagaagtttcagcttctgtatcctgatgctgtgagggagact
gcagtgaaaggactaattagaggggtggctgcacatcatgctggttgtcttccactatgg
aaatcatttgttgaggagctctttcagcgaggacttgttaaggttgtctttgctacagaa
accctggcggctggaattaatatgcctgctaggactgctgttatttcatctcttagcaaa
aggacaagcactggacgtatccaattaagccctaatgaattgcttcaaatggcagggcgt
gctggacgtagaggtatagatgaaaggggccatgttgtgatagtgcagactccttatgaa
ggtgctgaagagagctgcaagcttctattttctggagttgaacccctcgtatcacagttc
acggcttcatatggaatggtgttgaatcttctaggaggtgcaaaagttactcgtcactcc
aatgaatcagatgaaacaaacacattacaagcaaggagaactttggaagaggcaaggaaa
ttagttgaacaaagttttggaaattacttaggcagcaatgtgatgcttgctgcaaaagag
gagcttgctaaaatacagaaagagatagaggcattgacttatgaaattagtgatgaggct
atagatagaaagagccggaaacttctaacagaggtggcatataaggagattgcagattta
caagaggaattaagggcagaaaaacgtgtcaggactgaacttcgaagaaggatggagttg
aagagattttctgctctgaaacctctcctaaaggattttgaaaatggacacctacccttc
atttgcttgcagtataaggattctgaaggagttgaaaacttcgttcctgctgtttatcta
gcagaggttgaatcgcttgatgggtcaaaacttaagaacatggtttcagttgatgattct
tttgcactgagcagtgttggaacatctgacactcatcaagatgttgaaccagcttactat
gtggcccttggttcagataactcctggtatctatttacagaaaagtggattaaaactgtt
tatagaagtggctttcccaatgttgctttaactcagggagaagctttgccccgggaaata
atgaggacacttctcaaaaaagaggaaacacaatgggaaaaacttgctgattctgagctt
ggtggtctatggtgcattgaaggatctctggagacatggtcttggagtctaaatgtgcca
gttttaagtagtctttacgaaagtgatgaggtgttacatatgtcacaagaatacattgaa
tcagtggaacgttacagagagcaaaggaacaaagttgcacgtttgaagaaaaagatagcc
cgtactgagggcttccgagaatataaaaagatcttagacacggctaagtttacagaggaa
aagataaaaaggttgaaggctagatcaaatcatttgatcaatagaatagagcaaattgaa
ccttctggttggaaggagtttctacaaatcagcaaagtcattcatgaaacaagggcatta
gacatcaatacacatgtaatatttcccctgggtgaaacagcagctgcaattcgaggagaa
aatgaactgtggttggcaaaggtacttagaaacaaaatcttgctagagttaaagcctgcg
gaactcgctgctgtgtgcgcgagtttagtgtccgaggggatcaaggtacgcgcttggaaa
aacaataattacatatacgaatcttcgcctactgtcctaaatgtgattagtttactagaa
gaacaaaggaactcgtttgtccaacttcaagagaaacatgaggtagagatagcttgttgt
ttagatggccagttttcaggaatggtggaagcctgggcgtctgggttatcatggagggaa
ttgatgatggattgtgcgatggatgagggtgatttagctcgactattacgaagaacgatt
gaccttttggctcagatacctaaattgcctgatatcgataccttgctgcagaaaaatgcc
acaactgcatccgatgtcatggatcgtccacccataagcgagctcactggatga
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