Gossypium hirsutum (upland cotton): 107886389
Help
Entry
107886389 CDS
T04793
Name
(RefSeq) regulator of nonsense transcripts 1 homolog
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03013
Nucleocytoplasmic transport
ghi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
107886389
03015 mRNA surveillance pathway
107886389
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107886389
Enzymes [BR:
ghi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
107886389
5.6.2.5 RNA 5'-3' helicase
107886389
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
107886389
mRNA cycle factors
Common to processing body (P body) and stress granule
107886389
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
UvrD-helicase
Helicase_RecD
NPHP3_N
nSTAND3
Viral_helicase1
ATPase
PhoH
SRP54
AAA_16
AAA_22
Ribosomal_S13_N
AAA_32
AAA_25
AAA
Motif
Other DBs
NCBI-GeneID:
107886389
NCBI-ProteinID:
XP_016665825
UniProt:
A0A1U8HIE2
LinkDB
All DBs
Position
D08:56902788..56913516
Genome browser
AA seq
1263 aa
AA seq
DB search
MDSQYETASQPDPATDAYTFLEFNTQGESDFEYTDFRDPIRSWPTPSDAHSAERSGSDHH
SDTAASSSPSSASKGAGRGVASNNNSHSSSISNSAAVVDALATGISGLNFEETVGDEDGG
YDYGKGDFAEHSCRYCGVSNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVRSKHKEV
CLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLNVNALKDMNWDLSQ
WCPLIDDRCFLQWLVKIPSEQEQLRARQISAQQINKVEELWKTNPDASFEDLEKPGVDDE
PQPVALKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKDNVTVRWDIGLNKKRIAYFVFP
KEDNELRLVPGDELRLRYSGDAAHPVWQAVGHVIKLTAQEEVALELRASQGVPIDVNHGF
SVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGHEVEVQMVRNTLPRRFGAPGLP
ELNASQVFAVKSVLQKPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQ
LAEKISTTGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKDEQGEL
SSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQATEPECL
IPLVLGVKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGVKPIRLQVQYRMHPC
LSEFPSNSFYEGTLQNGVTINERQSSGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNR
TEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGSLRQQLYKEIEVASVD
SFQGREKDYIIVSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNG
LLTHYKENECLVEGPLNNLKQSMVQFQKPKKIYNERRLFFGGGPGIVPNDNFGAASSSPN
IDRRSSRARGTYMPPGPPNGTHKPGVHPTGFPMPRVPLPPFPGSPSQPYAIPSRGAVHGP
VRAVPQVPQPGSRGFGAGRGNASAPIGHHLPHQQGTQQNVGTIGSPFNFPPLDIPNSQPS
VGGPLSQPGFVNNMPVQGASQTIRDGFSMGGMSQDFLGEDFKSQGSHVPYNIADFSTQGG
YAVDYASQGAQSGFPGNFLNQNSQAGYSRFGAGNDFMTQDYMNHGSQGLFTQAGFNDPSQ
DDASQSHFGAANPNQLQSQGLMNSLYSQPFAHYNTQPLNLQSPQQQQPQQGQGSQNQNLH
YNG
NT seq
3792 nt
NT seq
+upstream
nt +downstream
nt
atggattctcaatacgagacggcctcgcaacctgacccagccaccgacgcttacaccttc
ctcgaattcaacacccaaggtgagtccgatttcgagtacacggacttccgtgatccgatt
cgttcatggccgacaccctccgacgcccactccgccgaacgatccggctccgaccaccac
tcggacactgctgcttcctcttctccctctagcgcttcgaaaggcgctggccgtggcgta
gcgagcaataacaacagccatagcagtagtattagcaatagtgcggccgtggtcgatgcg
ttagccacggggatcagtggattgaattttgaggagacggtcggggatgaggatggcggg
tatgactacggaaaaggggatttcgccgagcattcttgtcggtattgtggggtttcaaac
ccggcttgcgtggttcgctgtaatgtcccttcgtgtaggaagtggttttgtaattcaaga
gggaatacatccggctcgcatattgttaatcatctcgtgagatccaaacacaaggaagtc
tgccttcataaggatagtcctttgggagaaacaattcttgaatgctacaactgtggatgc
agaaatgtttttcttcttggttttatatctgctaagacagagagtgttgtcgttcttctt
tgtagagaaccttgtttgaatgtcaatgctttgaaggacatgaattgggatttgagtcag
tggtgcccccttattgatgataggtgctttctgcagtggttggttaagatcccttctgaa
caagaacagttaagggctcgacaaataagtgctcaacaaataaacaaggtggaagagctt
tggaagacaaatcctgatgcctcctttgaagatcttgagaagcctggtgtagatgatgaa
cctcagcctgtggcattgaagtatgaagatgcttatcagtatcaaaatgttttcgcacct
cttattaagcttgaagctgactatgataaaatgatgaaagaatctcaaagcaaggacaat
gtcacagttcgttgggatatcgggctaaacaagaaacgaattgcatattttgtctttcca
aaggaagacaatgaactccgtcttgtacctggtgatgagttgcgactgcgttattcagga
gatgctgcacatccagtgtggcaggctgttgggcatgtgatcaagctaacggcacaagag
gaggttgcacttgagcttcgtgctagtcagggagttcctattgatgtgaaccatgggttt
agcgttgattttgtatggaaaagtacaagttttgaccggatgcagggggcaatgaaaaca
tttgcagttgatgaaacaagtgttagtggatatatttaccatcaccttctcggccatgaa
gttgaggttcagatggttcgtaatacactgcctcgtcgttttggtgcacctggtctgcca
gaattgaatgcatctcaagtttttgcagtgaagagtgttcttcagaagcctataagcttg
attcaaggcccccctggcacaggaaaaactgtgacttctgccgccattgtctatcacatg
gccaaacaggggcaggggcaggttctggtctgtgctccaagtaatgtggctgttgatcag
ctagctgaaaagataagcacaactgggttaaaggttgtaaggctttgtgcaaagtctaga
gaagctgtcagttctcctgttgaacatttgacattgcattatcaggtccgacatcttgat
acatctgagaagagtgaacttcacaagttacaacaattgaaagatgaacaaggtgagttg
tcaagcagtgatgagaaaaagtacaaagcattgaagcgagcaacagagagggaaatatca
caaagtgctgatgtcatttgttgcacttgtgttggggctggagatcccagacttgccaat
tttaggttccgccaggtacttattgatgagtctactcaggcaacagaacctgagtgtctc
attcctttagttcttggagtgaagcaggttgtccttgttggtgatcattgccaacttggt
cctgttataatgtgcaagaaagcagctcgtgctgggctagcgcagtctctttttgaacgt
ctagttttacttggtgttaaacctattagattgcaggttcaataccgtatgcacccatgt
ttgtcagagtttccttctaacagtttctatgaaggcacattacaaaatggagtgacaatc
aatgaaaggcaatcatcaggcattgatttcccttggcctgtgcctaatcgtcccatgttt
ttctatgtacagatgggacaagaggagattagtgctagtggaacatcatatctcaatcga
actgaggctgcaaatgttgaaaagatagttaccacattcttgaggagtggtgttgttccc
agtcagattggggtcataacaccttatgagggacaacgggcatatattgtgaactatatg
tcaagaaatggttctttgaggcagcagctttacaaggaaattgaggttgcaagtgttgac
tcattccaaggacgggaaaaggattacatcattgtgtcttgtgtgagaagtaatgaacat
cagggtattggctttctaaatgaccctcgaaggcttaatgtcgccctaacacgtgctcga
tatggtattgtaattcttggaaaccctaaagttcttagcaaacagcctctatggaatggt
ttattgacacattacaaggaaaatgagtgtctggttgaaggacccctcaataacttgaag
cagagtatggttcaattccaaaagcccaaaaagatctacaatgaacggaggctgttcttt
ggtggtggacctggcattgtacctaatgataattttggggctgcctcatctagtccaaac
attgatagaagaagcagccgtgcccggggtacttatatgcctcctggtccacccaatggt
acacataagcctggagtgcatcctactgggttcccaatgccccgggttcctcttccacca
tttccaggctctccttctcagccttatgctattccatcccgtggagctgtacatggacca
gtgagagctgttcctcaagtccctcaaccaggaagtcgaggctttggggctggtcggggt
aatgccagtgctcctattggccatcatctcccacatcagcaaggcacacagcaaaatgtc
ggtactatcggatctccttttaacttccctcctctggatatcccaaacagccagccatct
gtaggtggtccattatctcaacctggatttgttaacaacatgcccgtccaaggggcaagc
cagacaattcgtgatggattttcaatgggaggaatgtcccaggacttcttgggtgaggac
ttcaaaagccaaggctcacatgttccttataacattgctgatttttcaacgcagggtggc
tatgcggttgattatgcttcacaaggagctcagagtgggtttccagggaacttcctaaac
cagaattctcaagctgggtattctcgttttggtgctggaaatgatttcatgactcaggac
tacatgaatcatggatcacaaggcctgtttactcaggctggctttaatgatccttcacaa
gatgatgcatcacagagccactttggtgcggctaatcccaaccagcttcagtctcagggt
ttgatgaactctctctactcccagccctttgcacactacaacacacagccactaaacttg
cagtctcctcaacagcagcaaccacagcagggccagggttcccaaaaccagaatcttcac
tataatggttaa
DBGET
integrated database retrieval system
