Gossypium hirsutum (upland cotton): 107886710
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Entry
107886710 CDS
T04793
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH5, mitochondrial-like isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107886710
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107886710
03012 Translation factors [BR:
ghi03012
]
107886710
Enzymes [BR:
ghi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
107886710
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
107886710
Translation factors [BR:
ghi03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
107886710
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
dsrm
DEAD
HA2_N
AAA_22
nSTAND3
ATPase
AAA_19
NACHT
Dicer_dimer
RsgA_GTPase
AAA_23
Motif
Other DBs
NCBI-GeneID:
107886710
NCBI-ProteinID:
XP_040956184
LinkDB
All DBs
Position
A03:complement(103690063..103708367)
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AA seq
1213 aa
AA seq
DB search
MPPSYSPHFLPFSSQFLTHTIKPSLFSPTMKDRPPSLYGAVYVPPHHRLISSPNNQNATK
NSSAPAILSKLRDHQNTPILNAKGTASPPSLPHLQQQQQQQGTYNNNNGSKSSNNQNAQY
NSAYCLGISENVSDRQLDLSLQSGTFDEANIEEWKQKLAMLLHDDGKQEFVSRDKKDRRD
FEQIAALASRMGLYSHLYSKVAVFSKVPLPNYRFDLDDKRPQREVSLNFGLLKRVNAYLG
EYLSKKSRNKESFSDNCFSRSSSNSSIVTEEGLFEQPEPLASGTAVMEKILLRRSSLLRD
QQQAWQESLEGREMLEFRQNLPAYKEKDTILIAILQNQVVIISGETGCGKTTQIPQFILE
SEIDSARGAFCSIICTQPRRISAISVSERVASERGEKLGESVGYKVRLEGIKGRDTRLLF
CTTGILLRRLLVDRNLKGVTHVIVDEIHERGMNEDFLLIVLKDLLPRRPELKLILMSATL
DAELFSSYFDGAPLIHIPGFTYPVRTHFLENILEMTGYRLTPSNQIDDYGQERMWKMSKQ
APRKRKSQIVSSVEDALRAADFKDFSRQTQESLSCWNPDCIGFNLIEYLLSYICENERPG
AVLVFMTGWDDISSLKDKLQAHPILGDPSRVLLLTCHGSMASSEQKLIFEEPEDGVRKIV
LTTNIAETSITINDVVFVLDCGKAKETSYDALNNTPCLLPSWVSKVSTQQRRGRAGRVQP
GECHHLYPRCVYDAFTEYQLPEILRTPLQSLCLQIKSLKLGSISEFLSRALQSPKLLAVQ
NAIEYLKVIGALDENENLTVLGRYLTMLPMEPKLGKMLILGAILNCLDPVLTIVAGLSVR
DPFLTPLDKKDLAEAAKLQFSHDHSDHLALVRAYEGWKEAEKDLAGYDYCWKNFLSAQSM
KAIDSLREEFLSLLKDTGLIDSYATSCNGWSYDQHLIRAVICYGLYPGICSVVHNEKSFS
LKTMEDGPVLLYSNSVNARESRIPYPWLVFNEKIKVNSVFLRDSTAVSDSVLLLFGGSIS
RGDVDGHLKMLGGYLEFFMQPAIAEKYLSLRREFDELIQIKLLNPQMVLHLHHELISAIR
LLVSEDQCDGRFVFGRPDLKPSNMPVAPPQHSLISRTESGPGGDNSKSRLQTLVTRAGYA
APTYKTSQLENNQFQATVEFNGMQIIGQPCNNKKSAEKDAAAEALQWLMSGTWTGHEYIN
YTSMFLKKSKRDN
NT seq
3642 nt
NT seq
+upstream
nt +downstream
nt
atgcccccctcttactctccgcatttccttcctttctcttcacaatttctcacccacacc
ataaaaccctcactcttttctccgacgatgaaggatcggcctccgtccttgtacggcgcc
gtctacgtccctccccaccaccgtctcatctcatctcctaacaaccaaaatgctaccaag
aactcctccgcccccgcgattctctccaagcttcgcgaccaccaaaacacacccattttg
aacgctaagggcactgcttctcctccttctttgccacacttacaacagcaacagcaacag
caagggacttataataacaataatggtagtaaaagcagtaataatcaaaatgcacagtat
aattcggcttactgtctggggatttccgagaatgtctctgatcgccagctggatttgtct
ttgcagtcgggtaccttcgatgaagctaacattgaagagtggaagcaaaagctagccatg
cttctacatgatgatgggaaacaggagttcgtatcaagggacaagaaggacaggcgagac
tttgagcaaatagcagctttggcaagcagaatgggtttgtatagccatctttattccaaa
gttgctgtcttcagtaaggttcccctgcctaactacagatttgacctggatgataagcgt
ccacagagggaggtgagcttaaattttggtttgttgaagagagtcaatgcctatcttgga
gagtacctttctaaaaagtctaggaataaggaaagcttttcggataattgtttttcaaga
tcaagcagtaatagcagtatagttactgaagaaggactttttgagcagccagagccttta
gcatctggcacagctgttatggagaaaattcttttgcggagaagttcactgctgcgtgat
cagcaacaagcgtggcaggagtctcttgaaggaagagaaatgctagaattccgtcaaaat
cttcctgcttataaagagaaagataccatattgattgccattttacagaatcaggttgtt
attatctcaggtgaaacaggatgtggcaagaccacacaaattccccaatttattctagaa
tctgagatagattctgcgcgcggagctttttgtagcattatatgtacgcaacctaggcga
atatctgctatatctgtttcagaaagagttgcttcagaaagaggagagaaattgggtgaa
tctgttggatataaagtacggcttgagggtattaaagggagggatacccgtcttctcttt
tgcacaacaggcattttgttgagaaggctactagttgatagaaatttaaaaggtgtaact
catgtcattgtggatgagattcatgaacgagggatgaatgaagatttcctactcattgtc
cttaaagatctccttcctcgccgcccagaattaaagctgattttgatgagtgcaactttg
gatgctgagcttttctcctcgtattttgatggggcacctttaatccacattccaggtttt
acgtacccagttcgaacacattttttggagaatattttggaaatgacaggttataggttg
actccatctaatcaaattgatgattatggacaagaaagaatgtggaaaatgagtaagcaa
gccccgagaaagaggaagagccaaattgtctcttctgttgaggatgcgctccgggcagct
gattttaaggatttcagccgtcagactcaggagtctttgtcatgttggaatcctgattgt
attggttttaatctcatagaatatcttttatcctatatctgtgagaatgagaggcccggt
gcagttctagtctttatgactgggtgggatgacataagttctctgaaggataagctgcaa
gctcatccaatccttggagatcctagtcgagttttgctacttacttgccatggttctatg
gcgagttctgagcagaagttaattttcgaagagcctgaagatggagtgaggaaaatagtc
ttaactactaatattgctgagacaagcataacaattaatgatgttgtttttgttcttgat
tgtggaaaggccaaggagacatcgtacgacgcattgaataacactccttgtttgctacca
tcatgggtttccaaggtttctactcaacaaagaagaggaagagctggccgagtgcagcct
ggagagtgtcaccatctctatcctcgatgtgtatatgatgccttcactgaatatcaatta
cctgaaattttgagaacacctttgcagtctctttgtctgcaaatcaaaagtttgaaactc
ggaagtatatctgaattcctatcaagggcattgcagtcaccaaagttactggcggttcaa
aatgccattgaatatttaaaagtcatcggggccttggatgagaatgaaaatctgactgtg
ctggggcgttatttgactatgcttccaatggagccaaaacttgggaagatgctcatcctt
ggtgctattcttaattgcctggatcctgtgttgactattgttgctggtcttagtgttaga
gatccttttttgacaccattagacaagaaagatcttgcagaggctgcaaagttgcaattt
tcccatgatcatagtgaccaccttgcacttgtccgggcttacgagggctggaaagaagcc
gagaaagaccttgctggatatgattattgctggaaaaattttctttctgcacaatcaatg
aaggcaattgattctcttagggaggagtttctttcattgctcaaggataccggtcttatt
gacagctatgcaactagctgtaatggctggagctatgatcagcatctcatccgagcagtt
atttgttatgggctttatcctggaatttgctctgtcgtgcataatgagaaatcattttca
ctgaaaactatggaggatggacctgtacttctttactcgaactctgttaatgctcgggaa
tctagaattccgtatccttggctggttttcaatgagaagataaaagtgaactctgttttc
ctgcgggattcaacagctgtctctgattcagtgcttctcctgtttggtggtagcatctca
agaggagatgttgatggacacttgaagatgttgggagggtatttagaatttttcatgcaa
cctgctatagctgaaaaatatctaagtttaaggagagaatttgatgagctgattcaaatt
aaattactgaatccccaaatggtcctacatcttcatcatgagctcatttctgcaatacgg
ttgctggtttctgaggatcagtgtgatggaagatttgtatttggccgtccagaccttaaa
ccatcaaatatgcctgttgctccaccacaacattctttgatttcaaggacagagagtggt
cccgggggtgataattctaaaagtcggctccaaacactggtcactagggcaggatatgct
gcgccaacctacaagacaagtcaattggaaaacaatcagttccaagctacggttgagttc
aatggtatgcaaatcatagggcagccttgcaacaacaagaagagtgcggaaaaggatgct
gcagctgaggctttgcagtggctgatgagtggtacctggacaggccatgagtatatcaat
tatacgtcgatgtttctgaagaaaagcaagagggataactga
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integrated database retrieval system
