Gossypium hirsutum (upland cotton): 107886763
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Entry
107886763 CDS
T04793
Name
(RefSeq) protein STABILIZED1 isoform X1
KO
K12855
pre-mRNA-processing factor 6
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107886763
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ghi03041
]
107886763
Spliceosome [BR:
ghi03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
107886763
Complex C
U5 SnRNP specific factors
107886763
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRP1_N
TPR_14
HAT_PRP39_N
TPR_19
HAT_PRP39_C
Suf
HAT_Syf1_CNRKL1_N
TPR_16
HAT_Syf1_CNRKL1_C
TPR_17
TPR_2
TPR_8
TPR_CcmH_CycH
TPR_1
TelK_stirrup
PMC2NT
Motif
Other DBs
NCBI-GeneID:
107886763
NCBI-ProteinID:
XP_040956767
LinkDB
All DBs
Position
A03:105927762..105932887
Genome browser
AA seq
1033 aa
AA seq
DB search
MVFIATPNSKTFSLNLNPKTTTLLSLQQSIQLRTQIPISYQHFLLSPNPTSSLLHSPDPD
SVLLYQLQITPYSTLFLHVPLCGGTQPGPSGAAVPKPRLDFLNSKPPPNYVAGLGRGATG
FTTRSDIGPARAAPDLPDRSATTIGGAAAPSGLGRGRGKPGEDEEDDEGEDKGYDENQKF
DEFEGNDVGLFASAEYDEDDKEADAVWEAIDKRMDSRRKDRREARLKEEIEKYRASNPKI
TEQFADLKRKLHTLSAEEWESIPEIGDYSLRNKKRRFESFVPVPDTLLEKARQEQEHVTA
LDPKSRAAGGTETPWAQTPVTDLTAVGEGRGTVLSLKLDRLSDSVSGLTVVDPKGYLTDL
KSMKITSDAEISDIKKARLLLKSVTQTNPKHPPGWIAAARLEEVAGKIQTARQLIQKGCE
ECPKNEDVWLEACRLASPDEAKAVIAKGVKSIPNSVKLWLQAAKLEHDDVNKSRVLRRGL
ENIPDSVRLWKAVVELANEKDAATLLERAVECCPLHVELWLALARLKDYDKAKKVLNRAR
EKLPKEPAIWITAAKLEEANGNNAMVGKIIERCIRALQREGFVIDREAWMKEAEAAERAG
SVVTCQAIIRNTIGIGVEEEDRKRTWVADAEECKKRGSIETARAIYAHALTVFLTKKSIW
LKAAQLEKSHGTRESLDALLRKAVTYRPQAEVLWLMGAKEKWLAGDVPAARAILQEAYAA
IPNSEEIWLAAFKLEFENHEPERARILLAKARERGGTERVWMKSAIVERELGNTEEERRL
LDEGLKQFPSFFKLWLMLGQLEERLGNLEKAKGVYESGLKHCPSCIPLWVSLAILEEKMN
GIAKARAVLTLARKKNPQQPELWLAAIRAEARHGYKKEADILMAKALQECPNSGILWAAS
IEMVPRPQRKTKSMDALKKCDHDPHVIAAVAKLFWHDRKVDKARTWLNRAVTLAPDIGDF
WALYYKFELQHGSEENQKDVMKRCLAAEPKHGEKWQAISKAVENSHQATEAILKKVVVVL
GKEESAAENNSKH
NT seq
3102 nt
NT seq
+upstream
nt +downstream
nt
atggtgttcatcgcaacgcctaattccaaaactttttccctaaatctaaaccctaaaacc
accactctcctttccctccaacaatccattcaactccgcacccaaatccctatttcttac
caacactttctcctctcccccaaccccacctcttcccttctccattcccccgatcccgat
tccgtccttctttaccaactccaaatcaccccttactctaccttattccttcatgttccc
ctctgtggtggcacccaacctggccccagcggtgccgctgtgcccaagccacgcttagat
tttctcaactccaagcctccccctaactatgttgctggtttggggcgtggtgccacgggc
tttaccactcggtctgatatcggtcccgcccgtgctgctcctgacttacctgaccggtcc
gctactactattggtggtgctgcagcgccctctgggcttggccgtggccgcggaaagcct
ggtgaagacgaagaagacgatgaaggtgaggataagggttacgatgaaaatcagaaattt
gatgaatttgaaggaaacgacgtgggtcttttcgcctccgcggagtatgatgaagatgat
aaagaagctgacgctgtttgggaggccatcgataagaggatggattcaaggaggaaagat
agaagagaggcaaggctgaaggaagagattgagaaataccgagcgtctaacccgaaaatt
actgagcagttcgcggatttaaagagaaagttgcatactttgtcagccgaggagtgggag
agtattccagaaattggggattattcgttgaggaataagaaaaggaggttcgagagtttc
gtgccagtcccagatactcttttggagaaggcaaggcaggagcaagagcatgttacggct
ttggacccaaagagtagggctgcgggtgggacggaaactccgtgggcgcaaacccctgta
acggatttaactgctgttggtgaagggagaggtactgtcttgtctttgaagttagatagg
ttatcggattctgtttcaggtttaactgttgtggatccaaaagggtatttgactgatttg
aaaagtatgaagattactagtgatgctgagatttcggatattaagaaggccaggttgttg
ttgaaaagtgttacgcagaccaatcccaaacatcctcccggttggattgcggctgcaagg
ttggaggaagtggctgggaagatccagacagctaggcagttgattcagaaagggtgtgag
gagtgtcccaagaatgaagatgtatggttggaggcttgtaggcttgcgagcccggatgag
gccaaggctgtgattgctaagggagtgaaatcaattcccaattcagtgaagttgtggtta
caggctgctaaattagagcatgatgatgtgaataaaagcagggttttgaggaggggtttg
gagaacataccggattctgtgaggttatggaaggctgttgtggagcttgcaaatgagaag
gatgcagcgactttgcttgaaagggccgtggagtgctgtcctttacatgtggagttgtgg
ttagcacttgctaggttgaaggattatgataaagctaagaaagtgcttaatagggcaagg
gagaagttgcctaaagagcctgctatatggattacagctgcgaagttggaggaggctaat
ggaaataatgctatggtgggaaagattattgagaggtgtattagggcattacaaagagaa
ggatttgtgattgatagggaggcttggatgaaggaggctgaggcggcagaaagggctggc
tctgttgtgacatgccaggcaatcattcgaaatacaattgggattggagtggaggaagag
gataggaagagaacttgggtggctgatgctgaagaatgcaagaagcggggttcaattgag
actgctagagctatctatgctcacgctcttactgtctttttgacaaagaagagcatttgg
ctgaaagcagctcagctggagaagagtcatgggactagggaatctcttgatgctcttctt
cgtaaagcagtcacgtaccggccacaggctgaggttctttggcttatgggtgccaaagag
aaatggcttgctggggatgtgcctgctgcacgtgctatccttcaagaagcatatgctgcc
atacctaattctgaggagatatggcttgctgcgtttaagcttgaatttgaaaaccatgag
cctgagagagcaagaatactccttgccaaggctcgagaaagaggaggcacagagagagta
tggatgaaatcagcgattgtggagagagaattggggaacaccgaggaagagaggaggttg
cttgatgaaggattgaagcaattcccatcattttttaaactgtggttgatgcttgggcag
ctcgaggaaaggcttggtaacttagaaaaggcaaagggagtttatgaatcaggtttaaag
cactgccccagttgtatacctctatgggtttctcttgctattcttgaagagaaaatgaat
gggattgctaaggctcgagctgtactcaccttggcaaggaagaagaatccacaacaacct
gaactctggcttgctgccatacgagctgaggcaagacatggctacaagaaggaagccgat
atcttaatggccaaggcattacaagagtgtccaaatagtggtatattgtgggcagcatct
attgagatggttccaaggcctcaacgtaaaaccaagagcatggatgccctcaagaagtgt
gatcatgatccccatgtcattgccgcggtggctaagctattttggcatgataggaaggtg
gataaagccaggacttggctaaatagggctgtgactcttgctccagatattggggatttc
tgggcattgtattacaaatttgaacttcagcatggtagtgaggagaaccagaaagatgtg
atgaaaagatgtcttgctgcagaaccgaagcatggtgagaaatggcaagctatttcaaag
gctgtagagaactctcaccaggctactgaagccattttaaagaaagtagtggttgtgttg
ggcaaggaagagagtgctgcggaaaataacagtaaacactaa
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