Gossypium hirsutum (upland cotton): 107886801
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Entry
107886801 CDS
T04793
Name
(RefSeq) probable pectate lyase 12
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi00040
Pentose and glucuronate interconversions
ghi01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
107886801
Enzymes [BR:
ghi01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
107886801
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
107886801
NCBI-ProteinID:
XP_016666362
UniProt:
A0A1U8HJY1
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Position
A01:117710409..117715210
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AA seq
481 aa
AA seq
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MLSISCIVLFFLLSSFFPFTISTFNLTVPIPHPNPNEVAQEVQRRVNASISRRETLQTTQ
KDISSCLTGNPIDDCWKCDPDWPNNRQRLADCAIGFGQYAKGGKGGEYYIVTDSSDDDAV
TPRPGTLRYAVIQEEPLWIVFPSNMHIKLKQELIFNSYKTLDGRGANVHITGGGCITVQY
ISNVIIHNVHIHHCYQSGEANVRSSPTHFGWRTESDGDGISIFGAKDIWIDHCSLSHCKD
GLIDAVMGSTGITISNNFFSHHNEVMLLGHSDDYEPDSGMQVTIAFNHFGEKLVQRMPRC
RRGYIHVVNNDFTQWEMYAIGGSGNPTINSQGNRYTAPSNPNAKQVTKRVDTDEGDWKGW
NWRSEGDVMVNGAYFVASGEGVEFKYEKAYSVEPKSAVLIDQLTMHSGVLGVGGRDNNLG
KWSSGANGGGSGFDLGDDEDDDYSDDMSGSDILLSTPFLPLFIAMSSFLLLCFEPITSPM
L
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgttgtccatcagctgcattgtcttgttcttcctcctctcctcattttttcccttcact
atatccacattcaacctcaccgttcctatcccacatcccaatcccaacgaagttgctcaa
gaagttcaaaggagagtaaatgcttcgatttcaagaagggaaaccttacaaacaacccaa
aaagatatatccagttgtttaacaggtaaccccattgatgattgttggaaatgtgaccct
gattggcctaacaatcgacaacggttagccgattgtgccatcggtttcggtcaatacgct
aagggaggcaaaggtggtgagtattacatcgtgacggattcgtccgatgacgatgccgtg
acaccaaggccaggaacacttaggtatgcagtgatacaagaagagccattgtggattgtg
ttccctagtaatatgcacattaagctcaaacaagaacttatatttaatagctataagaca
ttggatggacgtggggctaatgtgcatattaccggcggtgggtgtattactgtgcaatat
atcagcaatgtcattatccacaatgtacacatccaccattgttatcaatcaggtgaggca
aatgtaagatcaagtccaacacatttcgggtggagaacagaatctgatggtgatgggatc
tccatctttggagcaaaagacatatggatagatcattgctccttatcacattgcaaagat
gggttgattgatgcagtgatgggatcaacagggatcaccatatccaacaatttcttctct
catcacaatgaagtgatgttgttgggtcatagtgatgactatgagcctgattcagggatg
caagtcaccattgcctttaaccatttcggtgaaaagctggttcaaaggatgcctaggtgc
cgacgagggtacattcatgtggttaataatgatttcactcaatgggagatgtatgctatt
ggtggtagtggaaaccccaccattaatagccaagggaaccgttatactgcccctagtaat
cccaatgccaaacaggtgacaaagagagtggatacagatgaaggagattggaaagggtgg
aattggagatcagaaggtgatgtaatggtgaatggagcttactttgttgcctccggtgaa
ggtgttgagtttaagtatgaaaaagcttatagtgttgagcctaaatcagctgtcctcatt
gaccaactcaccatgcactccggtgttcttggagttggtggcagggacaacaatttgggg
aagtggagcagcggagccaacggcggtggaagcggttttgacttgggtgatgacgaagac
gacgactattctgatgacatgtcgggaagcgacatattgttatcaactccatttttacct
cttttcattgcaatgtcaagctttttgttgttgtgttttgaacctattacatcacccatg
ttgtga
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