Gossypium hirsutum (upland cotton): 107887072
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Entry
107887072 CDS
T04793
Name
(RefSeq) WD repeat and HMG-box DNA-binding protein 1-like isoform X1
KO
K11274
chromosome transmission fidelity protein 4
Organism
ghi
Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ghi03036
]
107887072
Chromosome and associated proteins [BR:
ghi03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Other sister chromatid cohesion factors
107887072
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Mcl1_mid
WD40_WDHD1_1st
WD40_Prp19
WD40
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
Beta-prop_WDR19_1st
ANAPC4_WD40
Beta-prop_TEP1_2nd
Ctf4_C
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_IFT140_1st
Beta-prop_IFT122_1st
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_EML
NBCH_WD40
Beta-prop_Vps41
Beta-prop_WDR35_TULP_N
eIF2A
WD40_MABP1-WDR62_1st
WDR90_beta-prop_4th
Beta-prop_WDR75_1st
WD_LRWD1
Beta-prop_RIG_2nd
Beta-prop_SCAP
Beta-prop_ELP1_1st
Beta-prop_SPT8
PEP5_VPS11_N
E7
Motif
Other DBs
NCBI-GeneID:
107887072
NCBI-ProteinID:
XP_016666690
UniProt:
A0A1U8HKV6
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All DBs
Position
A03:20610464..20616066
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AA seq
978 aa
AA seq
DB search
MKIKSVKLREAHEVSSNASFCSILWDLQAHHLVTASSSQPSISIHDPLLHSSPPRVLRHH
RDGVTALAVSPNSTCLASGSIDHSVKLYKFPGGEFETNITRFTLPIRALSFNKSGSMLAA
AGDDEGIKLINTIDGSIARVLKGHRGPVTGLAFDPNGEYLASIDSIGTVIYWELQSGRTL
YTLNGVAPDTGSDTSVLNVLSWSPDGETLAVPGMKNDIVMYDRDTAEKLFTLRGDHMQPI
CFMSWSPNGRYMATSSLDKQVLIWDVKRKQDIDRQNFDERICCMAWKPIGNALAVIDVMG
KYGVWESVVPSSMKSPTEDIPNSQTRNSNGLLFFDEEDQDLSMSGSLSDLGEDSHGESEP
PSRKRLRKQSVIDDDQHEDVYDELNLVRKTEPQRKVPRVNKENSDKDKDALKAMMAFRPK
MQEAFQPGSTPPHPGKRHFLCYNMLGSITTIKHDEYSHIEIDFHDTSMGPRVPPMTDHYG
FTMASLNENGSVFANPRKGEKNMSTLMYRPFRSWANNSEWYMRFEGEEVKAVALGSTWVA
AVTSLNFLRIFTNGGLQKHILSLNGPVVTAAGFSNELAIVTHVSDCLPSNEQMLEFTLFN
ISKGTQVFKGRLPLTPGSYLTWFGFSEEGQITSYDSKGILRVFTSQYGGTWLPLFSASKE
RKSGENYWVVGLNASKLFCIVCKNPDTFPKVLPKPVLTLLNLSFPLASSDLGEEALENEF
MVNNLNLSQIQNRIEVTAGEGLDTSSLDDEAFDIEAAQDRCIFRLIASCCNSDKLVRAIE
LVKLLSIEKSVRGAIQLATALKLPILAERFNDILEERLRNKAEVSNTTTLGSKHDPATKR
SETSEPIVSSSSAKLSAPLFTKKVKSLDRVKFGKQKTDSDQSRNLADSKEVKDAEKNGGS
SHVSSVKEVKNLETRCPSNPFSKLPNIQEGKKVEEATRSQFEGPSNKSSNEEAKKVVGEV
TGKQCQRPSNPFLKSTVK
NT seq
2937 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatcaaatcagtgaagctaagggaagcccatgaggtaagttccaatgcttctttc
tgctccatcttgtgggatctccaagcccaccacttggtcactgcgtcatcatcgcaaccc
tctatctctattcacgatcctcttcttcattcgagtccgcctcgggttcttcgccaccac
cgagatggggtcactgccttggcagttagtcccaattctacttgtcttgcttccggatct
attgatcattctgttaagctctataaattcccaggtggggaatttgagactaatattacc
aggttcacgctgcctattcgtgcactttcttttaataagtcagggagtatgctggcagct
gctggtgatgatgagggcattaaacttattaatacaattgatggctcaattgctagggtt
cttaaagggcatagagggcctgtcacaggtttagctttcgatcctaatggtgaatacttg
gcatcaattgattcaattgggactgtcatatattgggaacttcaatccggaagaacatta
tataccctcaatggtgtagctcctgatactggctcggatacttcggttttaaatgtactt
agctggagtcctgatggggagactttagcagtcccgggtatgaaaaatgacatagtgatg
tatgatagagatacggctgaaaagttgtttactttgagaggcgatcacatgcagccaata
tgtttcatgtcgtggtcacctaatgggagatacatggccacttctagcttggataagcaa
gttttgatctgggatgtcaagaggaagcaggatattgataggcagaattttgatgagaga
atatgttgtatggcatggaagccaattggaaatgctctggctgtcattgatgtcatggga
aagtatggagtgtgggaatcagttgttccgtcctcaatgaagtctcctactgaagacatt
ccgaattctcagacacggaacagtaatggcctcctgtttttcgatgaggaggatcaggac
ctcagcatgtcaggtagtttaagtgatcttggtgaggatagccatggtgagtctgagcct
cctagcagaaaaagattgcggaagcagtctgtaattgatgatgatcagcatgaagatgtt
tatgatgagttaaacttggttcggaaaactgaacctcagagaaaagtgcctcgtgttaac
aaggaaaattcagataaagacaaagatgcgttaaaagccatgatggcttttagaccaaaa
atgcaggaggcttttcagcctggttcaacaccaccgcatcctggaaaaaggcatttcttg
tgctacaatatgcttggaagtataactacaatcaaacatgatgaatattcccatatagag
atagattttcatgatactagcatgggtccacgagttccaccaatgactgatcattatggt
ttcacaatggcgtcactaaatgaaaatggtagtgtttttgcaaatccacgcaagggtgag
aagaacatgagtactcttatgtatcgaccatttcgcagttgggcaaataacagtgagtgg
tacatgcggttcgaaggtgaagaagtaaaggcagtcgcacttggttccacttgggtagct
gcagttacaagtcttaattttcttcgaatcttcaccaatggtggtttgcagaaacatatt
ctttcacttaatgggcctgtggtgactgcagcaggtttcagtaatgagttagccattgtc
acccatgtttctgattgtcttccttctaatgagcagatgctagagtttacattattcaat
atttcaaaaggaacccaagtcttcaaaggtcgtcttccgttaactcctggttcgtattta
acatggtttgggtttagtgaagaaggccagataacctcttatgattctaagggtatccta
agggttttcacaagccaatatggtggcacttggcttcctcttttcagtgccagcaaagag
aggaaatctggtgagaattattgggtggtcgggttgaacgcaagcaagttgttttgcatt
gtttgtaagaatccagatacattcccaaaggtgctccctaaaccggttcttaccctgtta
aacctgtcatttcctcttgcatcctctgatcttggggaagaagcccttgaaaacgagttt
atggtgaacaacctgaatctctcacagattcaaaacagaatagaagttacagctggtgag
ggcttggatactagtagtcttgatgacgaggcttttgatatagaggcagcacaagatcga
tgcatcttccggctcatcgcatcctgctgcaacagtgacaaacttgtgagagccattgaa
ctcgtgaagcttttatctattgagaaatcggttagaggtgcaatacaacttgccactgct
ttgaagcttcctattttggctgaacgattcaatgatatactggaggaaagattgagaaat
aaagctgaggtttcaaacaccactactctcggttcaaaacatgatcctgcaaccaaaaga
agtgaaacttcggaaccaattgtttcatcatcttcagctaaactatcagctcctctgttt
acaaagaaagtaaaatctttggatagagttaaatttggaaagcaaaaaacagacagtgat
caaagtagaaatctagcggacagcaaggaggttaaggacgcagagaagaatggtggatct
agccatgtgagtagcgtgaaagaggtgaagaacttagaaactcgatgcccttcgaatcca
ttttcaaagttacctaatattcaggaaggaaagaaggttgaagaagcgacgcgatctcag
ttcgaaggtccatcaaataagtcctcaaatgaggaagcaaagaaggttgtaggagaagta
acagggaaacaatgtcagcgacctagtaatccatttttgaagtctacagtgaagtaa
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