Gossypium hirsutum (upland cotton): 107887093
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Entry
107887093 CDS
T04793
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit B
KO
K07466
replication factor A1
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03030
DNA replication
ghi03420
Nucleotide excision repair
ghi03430
Mismatch repair
ghi03440
Homologous recombination
ghi03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
107887093
03420 Nucleotide excision repair
107887093
03430 Mismatch repair
107887093
03440 Homologous recombination
107887093
03460 Fanconi anemia pathway
107887093
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ghi03000
]
107887093
03032 DNA replication proteins [BR:
ghi03032
]
107887093
03400 DNA repair and recombination proteins [BR:
ghi03400
]
107887093
Transcription factors [BR:
ghi03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
107887093
DNA replication proteins [BR:
ghi03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
107887093
DNA repair and recombination proteins [BR:
ghi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
107887093
MMR (mismatch excision repair)
107887093
DSBR (double strand breaks repair)
HR (homologous recombination)
107887093
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
Rhabdo_glycop_CD
Motif
Other DBs
NCBI-GeneID:
107887093
NCBI-ProteinID:
XP_016666721
UniProt:
A0A1U8HKY9
LinkDB
All DBs
Position
A03:19814547..19817968
Genome browser
AA seq
626 aa
AA seq
DB search
MAKSLSQDAISTILANPSPDSSSDIPEIIVQVLDLKLTGNRYTFNASDGKMKLRAIFPSN
MSSEIITGSVQNKGLVRILDYTLNDIPNKSEKYLIVTKCEVVSPALETEIKAEVETEEHD
TVLKKPKLENEARYEAKADVSSIILKPKQEIVSKSAAQIVHEQRTNMAPSSRMAMTRRVH
PLVSLNPYQGNWMIKVRLTSKGNMRTYKNARGEGCVFNVELTDEDGTQIQATMFNEAARK
FYEKFQLGKVYYISRGTLKVANKQFKTVQNDYEMTLNENSVVEEASNEETFIPETKFNFV
PIDQLGPYVNGRELVDIIGVVQSVNPVSNIKRKIDNENIPKRDLIVADETKKTVVVSLWN
ELANNIGQELFDNADKSPIVAIKSLKVSDFQGVSLSTLGKSSVMINPDIPEAKKLRSWYD
SEGKGSSMASIGLGLSPSSKTGARSMYTDRVSLTHITSNPSLGDEKPAFFSIKAFVSLIR
PEQAMWYRACKTCNKKVTEAVGSGYWCEGCQKNDEECNLRYIMVSKISDTRGEAWVSAFN
EQAEKIVGCSADELDKLKSEQGDIDGYQKKLKEATWVPHLFKVSVTQNEYNNEKRQRITV
RAVAPINFAEESRFLLEEIKKMRNPQ
NT seq
1881 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaatctctgagccaagatgcgatttcaacgattttggctaacccatctcccgat
tcttcttcagatatccctgaaatcatcgttcaggtcttggatcttaagctcactggcaac
cgttacacgtttaatgcaagtgatgggaagatgaaactgagagcgatttttccatcaaac
atgtcatctgaaatcattacaggcagtgtccagaacaagggtcttgtcaggattcttgat
tataccctcaatgatatccccaacaaatctgaaaagtatttgattgtaacaaaatgcgag
gtagtatctcctgcacttgagacagaaattaaagctgaagtcgaaactgaggaacatgac
actgttttaaagaagccaaagcttgaaaatgaagctaggtatgaggctaaagctgacgtg
tctagtattattttgaagccaaagcaggaaattgtttcaaagtctgcggctcaaatagta
catgagcaacgaacaaacatggctccatcatcacggatggcaatgacaagaagagtgcat
cctcttgtttcattgaatccttaccagggcaattggatgattaaagttcgtctcacaagc
aagggaaacatgcgtacttataagaatgctagaggagaaggttgtgttttcaatgtggag
ttaacagatgaagatggtacacaaatacaagccacaatgtttaatgaagctgctaggaag
ttctatgagaagtttcaactggggaaggtctactacatatcaagaggaacactaaaagtt
gcaaacaaacagtttaagactgttcaaaatgattatgaaatgactttgaatgagaattcc
gtggtggaagaggcttctaatgaagaaacgtttattcctgaaactaaattcaactttgtc
cctattgatcaattaggcccttatgttaatggacgggagcttgttgatattattggagtt
gttcaaagtgtcaaccctgtatcaaacattaaaaggaagattgacaatgagaatattcca
aagagggatctgattgttgcagatgaaacgaagaagacagtagtcgtttctttgtggaat
gagcttgcaaataatattggccaggaattgtttgacaatgctgataaatctcctatagta
gcaattaaatcactcaaagttagtgattttcaaggtgtatctttgtcaacattgggcaaa
agtagtgtgatgattaatccagatatacctgaagcaaagaagttgagatcttggtatgat
tcggaagggaaagggagttccatggcctccatcggcttaggtttgagtccttcatccaag
actggggcaaggtctatgtatactgatagggtttcccttactcatatcactagtaaccca
tctttgggtgatgaaaagcctgcatttttcagcattaaagcatttgtcagcttgatcagg
cctgagcaagcaatgtggtaccgtgcttgcaaaacatgcaacaagaaagttactgaagct
gttggatctggctattggtgtgagggatgccagaaaaatgatgaagagtgtaatttaaga
tacataatggtctcaaagatctctgatacaagaggtgaagcctgggtttcagcctttaat
gaacaagcagagaaaattgttggatgctcagctgatgaacttgataaactcaagtcggag
caaggggatattgatggataccaaaaaaagttgaaggaagcaacttgggttcctcatctt
ttcaaagtcagtgttactcaaaatgagtataacaatgagaagcggcaaaggataacagta
agggctgttgctccaatcaactttgctgaagaatccaggtttctgcttgaagagatcaag
aagatgagaaatcctcagtag
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