KEGG   Gossypium hirsutum (upland cotton): 107887527
Entry
107887527         CDS       T04793                                 
Name
(RefSeq) DNA ligase 1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
ghi  Gossypium hirsutum (upland cotton)
Pathway
ghi03030  DNA replication
ghi03410  Base excision repair
ghi03420  Nucleotide excision repair
ghi03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:ghi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    107887527
   03410 Base excision repair
    107887527
   03420 Nucleotide excision repair
    107887527
   03430 Mismatch repair
    107887527
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ghi03032]
    107887527
   03400 DNA repair and recombination proteins [BR:ghi03400]
    107887527
Enzymes [BR:ghi01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     107887527
    6.5.1.6  DNA ligase (ATP or NAD+)
     107887527
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     107887527
DNA replication proteins [BR:ghi03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    107887527
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     107887527
DNA repair and recombination proteins [BR:ghi03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     107887527
   NER (nucleotide excision repair)
    Other NER factors
     107887527
   MMR (mismatch excision repair)
    Other MMR factors
     107887527
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Other DBs
NCBI-GeneID: 107887527
NCBI-ProteinID: XP_040962558
UniProt: A0ABM3B665
LinkDB
Position
A03:5546334..5555534
AA seq 799 aa
MLTFRPSHLLRYTCCITRPLTPLLPPFSSHILPSNSPFFRPKPLSLSSLNPHSNMSTRPS
AFDALMSNARRLAGKKSSSSSSPTKKRKSPDSSPTQNPNPPKTVGSTEVKHDAEVSSDGI
GKPINDSPKPDLDEAKKPPDSKKVKVGSASERNAEMKGKIGLLKKKPADFDPNMVACWEK
GERVPFLFLSLAFDLISNETGRIVITDIVCNMLRTVIATTPDDLVATVYLAANKVAPAHE
GLELGIGDASIIKALAEACGRTESQVKSQYKDKGDLGLVAQASRSSQSMMRKPDPLTVIK
VFDTFRLIAKESGKDSQEKKKNRIKSLLVAATDCEPQYLIRLLQAKLRIGFSEQTLLAAL
GQAAVYNEQHSKPPPNVQSPLEEAAKIVKQVFSILPVYDKIVPALLTGGVWDLPKSCGFT
PGVPVGPMLAKPTKGVAEIINKFQDIDFICEYKYDGERAQIHYMENGSVEIYSRNAECNT
GKFPDVVAAISRFKKSSVKSFVLDCELVAYDRVQKKILPFQILSTRARKNVVVSEIKVDV
CIFAFDIIYLDGQPLLHEQLKVRKERLYDSFEEEPGFFQFATALTSNDLEEIQIFLNSAV
SSSCEGLIIKTLDRDATYEPSKRSLNWLKLKKDYMESIGDTLDLVPIAAFHGRGKRTGFY
GAFLLACYDENNEEFQSICKIGTGFSEAELEERSASLRSKVIPEPKSYYRCSEMMKPDVW
FETSEVWEVKAADLTISPVHRAAIGIVDPDKGISLRFPRLVRVREDKTPEQASSSEQVAE
MYNAQKHNQTNNEDDGEDD
NT seq 2400 nt   +upstreamnt  +downstreamnt
atgctaacgtttcgcccatcccatcttctccgctatacttgttgtattactcgtcctctc
acccctctccttcctcccttttcctcccatatccttccttccaactcgcctttctttcgc
cccaaacccctctctctttcttccttaaaccctcactccaacatgtccactcgcccctcc
gccttcgatgctttaatgtctaatgctcgccgtttagccggtaagaagagctcttcctct
tcttcgcccaccaagaaacgcaaatcccccgattcgtcgcccacccaaaaccctaatccc
cccaaaaccgtcggctccactgaagtcaagcacgacgcagaggtttctagtgatggaatc
ggaaagcccattaacgattccccaaaacccgatttagatgaggcgaagaaacccccggat
tcgaagaaggtgaaggtggggagcgcctccgagagaaacgcggagatgaaagggaaaatt
ggtttgttgaagaagaagccggcggattttgatcccaatatggtggcgtgttgggagaaa
ggagagagggtgccgtttttgtttctgagcctggcgtttgatttgatatccaatgagacg
ggtcggattgtgataacggatattgtttgcaatatgttgaggactgttattgctaccacg
ccggatgatttggtggcgacggtttacttggcagcaaataaggttgctccggcgcacgag
gggttagagctgggaatcggtgatgcatccattatcaaggccctagctgaggcctgtggg
aggactgaatcacaggttaagagtcagtacaaggataaaggggacctgggccttgttgca
caggctagccgttcatctcaatcaatgatgcgcaagcctgatccattgactgttatcaaa
gtgtttgacacgtttcggctaattgctaaggaatctggaaaggatagtcaggagaagaaa
aagaatcgtatcaaatcacttcttgttgctgcaactgactgtgaacctcagtatttgatt
cgtctgcttcaggcaaagctgcggattggattttcagagcagactctgttagctgcatta
ggacaggctgctgtatataatgaacaacattctaaaccacctccaaatgttcagtctcct
ttagaggaggctgctaagattgtcaaacaagttttttctatccttccagtctatgataaa
atagtcccagcactcttgactggtggtgtatgggatctgcctaagagttgtggctttacg
ccgggtgttcctgttggacctatgctagcaaaaccaaccaaaggtgttgctgaaatcata
aataaattccaggacattgacttcatatgtgaatataaatatgatggagagcgtgcgcag
atacactatatggagaatggttcagttgagatatacagccgaaatgctgagtgtaacact
ggaaagtttcctgatgttgttgctgcaatttctagatttaagaagtcctctgtaaaatca
tttgttttggattgtgagcttgttgcttatgatcgtgttcaaaagaaaatattacccttt
cagatccttagtacaagagcacggaaaaatgtggtagtgagtgaaataaaagttgacgtg
tgcatattcgcttttgacatcatataccttgacgggcaaccacttcttcatgagcaactg
aaagttcgtaaggagaggctttatgattcatttgaggaagaacctgggttttttcaattt
gcaacagccttaacatcaaatgatcttgaggagattcaaatattccttaattctgctgtt
tcttcaagttgtgagggtttaattatcaaaacattggatagagatgctacatatgagcca
tcgaagcggtcactcaactggctaaaattgaagaaagactacatggaaagtattggcgac
acattagatctagtacctattgctgctttccatggccgtgggaaacgaactggcttctat
ggtgcttttctcttggcatgttatgatgaaaataatgaagaattccagagtatctgtaaa
ataggtactggattttctgaagcagagcttgaggaacgttctgccagtctccgctctaaa
gtgattcctgaaccaaagtcatactatcgttgttctgagatgatgaagccggatgtatgg
tttgagacttcagaggtttgggaggtaaaagctgctgacttgaccattagccctgttcat
cgtgctgctattgggattgtggatcctgataagggcatatctctccgatttccacgttta
gttcgtgttcgagaagataagacaccagagcaagcttcatcatctgagcaggttgctgag
atgtataatgctcaaaaacacaatcaaaccaataacgaagacgatggtgaggatgattga

DBGET integrated database retrieval system