Gossypium hirsutum (upland cotton): 107888018
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Entry
107888018 CDS
T04793
Name
(RefSeq) pectate lyase-like
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi00040
Pentose and glucuronate interconversions
ghi01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
107888018
Enzymes [BR:
ghi01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
107888018
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GFIT
Motif
Pfam:
Pectate_lyase_4
Pec_lyase_N
Beta_helix
Motif
Other DBs
NCBI-GeneID:
107888018
NCBI-ProteinID:
XP_016667691
UniProt:
A0A1U8HNU2
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Position
A03:17430243..17433183
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AA seq
434 aa
AA seq
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MTMKVVKIILFLGLIVYSPIVKGNIGHFDEVWQERAENAKKGAFKAYNPNPENVTNDLNR
ETEKVLEGQNNTRRGLYKHHGPCLATNPIDRCWRCDPKWAKDRKKLVNCVLGFGRKTTGG
KAGRYYVVTDPSDNDMVNPKPGTLRHAVIQKEPLWIIFAHHMVIRLNQELIMAGDKTIDG
RGFQIHIVGGAQITLQFINNVIIHGLHIRNSVQAHGGMIRDSVDHYGQRTMSDGDGITIF
GSHNIWIDHLSMSKCYDGLIDILMASTAITISNCHFTNHNDVFLFGSSDSFSDDQIMQVT
VAFNHFGKGLVQRMPRVRWGFVHVVNNDYTHWLMYAIGGSKNPTILSEGNRFIAPPDKRA
KEITKREYSPESVWKSWKWRSVNDLMMNGAFFVESGGPISRGNKKDVIKAKTGASAGRLT
RFAGALNCVEHKPC
NT seq
1305 nt
NT seq
+upstream
nt +downstream
nt
atgactatgaaggttgttaagattatattgtttctggggctaattgtatatagtcccata
gttaaaggtaacattggtcattttgatgaagtgtggcaagaacgagctgaaaatgcaaag
aaaggtgccttcaaagcctacaatcctaatcccgaaaatgtaaccaatgatttaaaccgc
gaaactgagaaggtgttggaaggtcagaataacacaaggagaggactatataaacaccat
ggtccatgcctagccactaaccctattgacagatgctggagatgtgatccaaagtgggct
aaagaccgcaagaagctagttaactgtgtcctaggattcggccgcaaaaccaccggaggc
aaggcaggtcgatattatgttgtaacagatccgtcagacaacgatatggtaaaccctaaa
cccggaaccttacggcatgcagtgatccaaaaagaacctctttggatcatatttgctcat
cacatggtgattaggttaaaccaagagctgattatggctggtgacaagaccatagacggt
cgaggatttcaaattcacattgtgggtggtgctcaaatcacattgcagttcattaataat
gttatcatccatggccttcacattcgtaattcggtacaagctcatggtggcatgatacga
gactccgttgatcattacggtcaacgtacgatgagtgacggtgatggaatcacgatattt
ggatcccacaatatttggatcgatcacctttctatgtccaaatgctacgatggattaatc
gatattcttatggcatctacggccattaccatctctaactgccattttactaatcataac
gatgtcttcctgtttggaagtagtgatagcttctcagatgatcaaatcatgcaagtaacg
gttgctttcaaccattttggcaaaggattggtgcaaaggatgccaagggtccgatgggga
ttcgttcatgttgtcaacaatgattacactcattggctaatgtatgccattggtggtagc
aaaaaccctaccatcctaagtgagggcaaccgattcattgctcctccagacaaacgcgct
aaagagattaccaagagggagtattcaccagagagtgtatggaagtcatggaagtggaga
tctgtgaatgatctaatgatgaatggggccttctttgttgaatctgggggaccaattagt
aggggaaacaagaaagacgtgatcaaggcaaagacaggagcttctgcaggcaggctaaca
cgctttgcaggggctctcaactgcgtcgaacacaaaccctgttga
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