Gossypium hirsutum (upland cotton): 107888367
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Entry
107888367 CDS
T04793
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH10-like
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107888367
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107888367
03041 Spliceosome [BR:
ghi03041
]
107888367
03009 Ribosome biogenesis [BR:
ghi03009
]
107888367
03016 Transfer RNA biogenesis [BR:
ghi03016
]
107888367
Enzymes [BR:
ghi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
107888367
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
107888367
Spliceosome [BR:
ghi03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
107888367
Complex C
U4/U6.U5 tri-SnRNP related factors
107888367
Ribosome biogenesis [BR:
ghi03009
]
Eukaryotic type
Pre-60S particles
Helicases
107888367
Transfer RNA biogenesis [BR:
ghi03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
107888367
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
nSTAND3
ATPase_2
Late_protein_L2
AAA_13
Motif
Other DBs
NCBI-GeneID:
107888367
NCBI-ProteinID:
XP_016667940
UniProt:
A0A1U8HPG8
LinkDB
All DBs
Position
D13:58754491..58770118
Genome browser
AA seq
990 aa
AA seq
DB search
MEEEPAAPGKRKSPEKSDVTETPKQESAPKRRTLARTCVHEVAVPSGYVSTKDESIHGTL
SNPAYNGEMPKTYQFELDPFQQVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQ
RVIYTSPLKALSNQKYRELHQEFNDVGLMTGDVTLSPNASCLVMTTEILRGMLYRGSEVL
KEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATEFAEWICHLHKQP
CHVVYTDFRPTPLQHYVFPMGGSGLYLVVDENEQFREDNFMKLQDSFVKQRPGDWSKNKE
GKSGGRATKGGGGSGGSDIYKIVKMIMERKFHPVIVFSFSRRECEYHAMSMSKLDFNTKE
EKDDVEQVFRNAVLCLNEEDRCLPAIELMLPLLMRGIAVHHSGLLPVIKELVELLFQEGL
IKALFATETFAMGLNMPAKTVVFTSVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDERGIC
IIMVDEQMEMNTLKDMVLGKPAPLVSTFRLSYYSILNLMSRAEGQMTAEHVIRNSFHQFQ
YEKALPDIGKKVSKLEQEADLLDASGEAEVAEYHKLKLELAQLEKKLMSEITRPERVLYY
LDPGRLIKVREGSTDWGWGVVVNVVKRTPAGLGALPARGGGYIVDTLLHCSPGSSENGVR
PKPCPPCPGEKGEMHVVPVQLPLISALSKIKVSIPADLRPPEARQSLLLAVQELGTRFPQ
DLPKLNPVTDMKIEDQEIVELVKQIEEHEKKLFAHPLHKSQDENQIRSFQRKAEVNHEIQ
QLKSKMRDSQLQKFRDELKNRSRVLKKLGHIDADGVVQLKGRAACLIDTGDELLVTELMF
NGTFSDLDHHQVAALASCFIPVDKSSEQIQLRTEIAKPLQQLQESARKIAEIQHECKLDV
NIDEYVESTVRPFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLCAAAQ
AVGEVNLESKFAAASESLRRGIMFANSLYL
NT seq
2973 nt
NT seq
+upstream
nt +downstream
nt
atggaagaagaaccagctgcaccagggaagcgaaagtcacctgaaaagtcagatgtcacg
gagacccctaagcaagaatctgcccccaaacggagaacactagcacggacatgtgtgcat
gaggtcgcagttccaagcgggtacgtttcaactaaagacgaatccattcatggcacactc
tcgaatcctgcctacaatggggaaatgcctaaaacttatcagtttgagcttgatcctttt
cagcaagtttctgtagcgtgcttagaaaggaacgagtcagttttggtttcagcacatacg
tctgcaggtaaaactgcggttgctgagtatgccattgctatggcctttagagataagcaa
agggtcatatatacttcaccgttgaaagctttgagtaaccagaagtacagggagctgcat
caagagttcaacgatgtggggctgatgactggtgatgttaccttgtctcctaatgccagt
tgtctcgtcatgacaacagaaattcttagagggatgctttacaggggctcagaggttttg
aaggaggttgcatgggttatttttgatgaaattcattatatgaaagatagggaaagagga
gttgtttgggaagagagtataatatttttgccaccagcaataaaaatggttttcctttca
gcaaccatgtccaatgccactgaatttgcagagtggatttgtcatttacacaaacagcct
tgccatgtggtgtacacggatttccggccaactcctttgcagcattatgttttccccatg
ggtgggagtggattgtaccttgtggttgatgagaatgagcaatttagggaggacaatttt
atgaagctccaggactcatttgtaaagcagagaccgggtgattggagcaagaataaagaa
gggaagagtggtgggagagctaccaaaggtgggggtggttcagggggttctgacatatac
aaaatcgtgaagatgattatggaacggaaatttcacccagtcattgtttttagcttcagt
agaagagagtgcgaatatcatgcaatgtctatgtctaagcttgactttaatacgaaagag
gagaaggatgatgtagaacaagtttttcgcaatgcagtactgtgcttgaatgaagaagat
agatgtttgcctgccattgagttaatgttaccactgcttatgagaggcattgctgtacac
cattctggtcttcttcctgttatcaaagaattggtggagcttcttttccaggaaggcctt
ataaaggcactttttgccacagaaacttttgcaatgggtttaaatatgccagcaaaaact
gttgtattcacttccgttaagaagtgggatggtgatagccatcggtatataggatctggt
gagtatatccagatgagtggaagggcagggcgccgtggcaaagatgaacgtggtatttgt
attattatggttgatgagcagatggagatgaatacactcaaggacatggttttgggtaaa
ccggctcctttagtcagtactttcagactcagctactattcaattttgaatttaatgagc
cgtgcggaagggcagatgactgctgagcacgtgataaggaactcattccaccagtttcag
tatgagaaggccttacctgatatagggaagaaagtttcaaagctggagcaggaagctgac
ttgctagatgcttctggagaggctgaggtagctgaatatcataaactaaaacttgaatta
gcccagttagagaagaagttgatgtcagaaatcactaggcctgaaagagtactttattat
ctcgatcctggacggctgatcaaagtaagagaaggcagtacagactggggctggggagtt
gtagttaatgttgttaaaaggacccctgcaggattaggtgcattgcctgcacgtggtggt
ggttatattgtggatacattacttcattgttcgcctggttctagtgagaatggtgtacga
ccaaaaccatgtcctccctgtccgggggagaagggtgaaatgcatgtggttcctgtccag
ttgcctcttatttctgccctgagtaaaattaaagtgtccataccagctgatcttcggcca
cctgaagccaggcagagtttattacttgcagtgcaggagctagggactcgatttccacaa
gaccttccaaaacttaatcctgttacggacatgaaaattgaagatcaagaaattgttgag
ttagtgaaacaaattgaggaacacgaaaagaagttgtttgctcatccactccacaagtct
caagatgagaatcaaattagatcttttcagaggaaggcagaggtgaatcatgagattcaa
cagctcaagtcaaaaatgcgtgattcccagcttcaaaaattccgtgatgaacttaagaac
cgttcaagggtcctgaagaagttaggccatattgatgctgatggtgttgttcagttgaag
ggacgggcagcctgcttgatagacactggagatgaactgcttgtgacagaactgatgttt
aatggtacattcagtgatcttgatcatcaccaagtagcagcccttgcaagttgtttcatt
ccagtagataaatcaagtgaacaaatacagttgaggacagagattgccaaaccattacag
caactccaagaaagtgcaagaaaaatagcagagatacaacatgaatgcaaattggatgta
aacatcgacgagtatgtagaatcaactgtaagaccatttttgatggatgtgatttattgt
tggtcgaagggtgcaacttttgcagaggtaatacagatgaccgatatatttgagggtagc
attattaggagtgctagaaggcttgatgagtttctgaaccagctctgcgctgccgctcaa
gctgttggagaagtcaatttggagagtaagtttgccgcagcaagtgaaagcctacgtcga
ggcatcatgttcgccaactccctttatctgtaa
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