Gossypium hirsutum (upland cotton): 107888417
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Entry
107888417 CDS
T04793
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15 isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03013
Nucleocytoplasmic transport
ghi03015
mRNA surveillance pathway
ghi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107888417
09122 Translation
03013 Nucleocytoplasmic transport
107888417
03015 mRNA surveillance pathway
107888417
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107888417
03041 Spliceosome [BR:
ghi03041
]
107888417
Enzymes [BR:
ghi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
107888417
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
107888417
Spliceosome [BR:
ghi03041
]
Complex C
Other components
EJC/TREX
107888417
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
107888417
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
YihI
Motif
Other DBs
NCBI-GeneID:
107888417
NCBI-ProteinID:
XP_016668009
UniProt:
A0A1U8HXB4
LinkDB
All DBs
Position
D13:59268015..59272883
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AA seq
428 aa
AA seq
DB search
MGETRDNDVYEEDLLDYDEEEEKAPDSVTAKVNGEAGKKGYVGIHSSGFRDFLLKPELLR
AIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSSLQQIEPSPGQVIALV
LCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKVHKDLLKNECPHIVVGTPGRILA
LTRDKDLSLKSVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPV
CKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVS
RAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNI
VINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIKELPEQI
DTSTYMPS
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgggagaaacaagagacaacgatgtctacgaggaagatctcctcgattacgatgaagaa
gaagagaaagcccctgactctgtcactgctaaagtcaatggcgaggctggcaagaagggc
tatgttgggattcacagttctggattcagagacttccttttgaaaccagagcttcttcgg
gccattgtcgattctggattcgagcacccttccgaagtgcaacatgaatgtattccccaa
gctatactgggtatggatgttatttgccaagctaaatcaggaatggggaagactgcagtt
tttgttctatcttcattacagcaaattgaaccaagtcctgggcaagttattgccctcgtt
ttatgccatacaagggagttagcttaccagatttgtcatgagttcgagaggttcagtact
tatctgcctgatatcaaggttgctgtcttctatggtggtgtcaacatcaaagttcacaaa
gatttgctgaaaaatgaatgccctcacattgttgttgggacccctggaagaattttggct
ctgaccagagacaaggacctttctttgaagagtgtgaggcatttcattctcgatgaatgt
gacaagatgctggaatcacttgacatgaggagagacgtgcaggagattttcaagatgacc
cctcatgataagcaagttatgatgttttcagccacactcagcaaagaaatacgccccgtt
tgcaagaaattcatgcaagatcctatggaaatttacgttgacgacgaggccaagttgacc
cttcatggtcttgtgcagcactacatcaaattgagtgaactggagaaaaaccgcaagttg
aatgacctccttgatgcgttggacttcaatcaagttgttatctttgtcaaaagtgtgagc
cgagcagctgagttgaacaagttacttgtggagtgcaattttccttccatatgcatccac
tctggcatgtctcaggaagaaaggttaactcgctacaagggtttcaaggaggggcataaa
agaattcttgtggcaaccgatttggttggaaggggaatcgacattgaacgagttaacatt
gtcatcaactatgacatgcctgattctgctgatacatacctgcacagggttggtagagct
ggtcggtttggcaccaagggtcttgcaattacatttgtttcatccgcttcagattctgat
gtgctcaatcaggtccaagagaggtttgaggttgatataaaggagcttcctgagcagatt
gatacatctacgtacatgccatcataa
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