Gossypium hirsutum (upland cotton): 107888554
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Entry
107888554 CDS
T04793
Name
(RefSeq) CCR4-NOT transcription complex subunit 3 isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107888554
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107888554
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
107888554
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
107888554
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF5965
Motif
Other DBs
NCBI-GeneID:
107888554
NCBI-ProteinID:
XP_016668200
UniProt:
A0A1U8HQ94
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Position
A11:110252975..110260551
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AA seq
888 aa
AA seq
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MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD
QIKTWIQSSEIKDKKVSASYEQALVDARKQIEREMERFKICEKETKTKAFSKEGLGQQPK
TDPKEKAKSETRDWLNNVVGELESQIDSFEAEIEGLSVKKGKTKPPRLTHLETSITRHKA
HIMKLELILRLLDNDELSPEQVNDVKDFLDDYVERNQEDFDEFSDVDELYNSLALDKVDA
LEDLVAIGPLSKAAPILGLKPSLASSTSQLPQVSSPLEHAEDTASQDSNSDVARTPPSKS
CAITSAIATPCGSHPIPAPLNLSPHSLSGTSTPPIVLPGSSSARSVLENTGTTNPSSPVN
LPNDTKEEDITSFPGRRPSPSLTDTGVRGIARGGLSGQPSSSIPLVSGSMASGNGALGVV
PSVSDMAKRTILGTDERPGNSSMVQSLVSPLSNRMMLPQTAKANDGGASVDSSNPSESAG
IPGRVFSPSMVSGMQWRPGSSFQNQNDPGQFRGRTEIAPDMREKYLQRLQQVQQQGHSNL
LGVPPLAGGNLKQFSAQQAPLMQQFNSQSSSLSIQSGLGLGGQASGFNSVTAASLQQQQN
PIQQQSSQQALATNVPKDGDIGNAKVEEQQPRNLPDDSSSEAVPTSGLAKNLMNEDEMKT
QYAIDSPAAVSGSLTEPAQVIRDVDLSPGQPLQSNQSSSVLGVIGRRSVTDFGAIGDNLS
GSMNTGGMHDQLYNLQMLEAAYYKIPQPKDSERARSYTPKHPAATPASYPQVQAPIVNNP
AFWERISLDGYGTGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPK
IATDEFEQGTYVYFDFHIANDDHQHGWCQRIKTEFTFEYNYLEDELIC
NT seq
2667 nt
NT seq
+upstream
nt +downstream
nt
atgggagcgagtcgcaagcttcaaggagaaatcgatcgtgttctgaagaaggtccaggaa
ggcgttgatgtcttcgatagcatctggaacaaggtttatgatactgataatgcgaatcag
aaggaaaagtttgaggcagacttgaagaaggaaatcaagaagctgcaaaggtatagggac
cagatcaagacatggattcagtccagtgagatcaaggataaaaaagttagtgcatcttat
gagcaggccctggtggatgctcggaaacaaattgagcgtgaaatggaaagatttaagata
tgtgaaaaagagactaagacaaaagcattctctaaagaaggcttgggtcaacagcctaaa
actgatccaaaggagaaggctaaatcagagacaagggattggttgaacaatgtggttgga
gagttggaatcccagattgatagttttgaagctgagattgaagggctttctgtgaagaaa
gggaagacgaaaccacctagactgacacatttggagacatcaattacccgacacaaagct
catataatgaagttagaattgattttgagattattggataatgatgaattgagtccagag
caggtcaatgatgtgaaagacttcttggacgattatgttgaacgtaatcaggaggacttt
gatgaatttagtgatgttgatgagctctacaactctttagctttagacaaagtggatgct
cttgaagatctggttgctattggtcctctttccaaggctgcaccgattcttggattgaag
ccatctttggcatcatcaacatctcaattgccgcaggttagttcccccctggagcatgca
gaagatacagcttcccaggatagtaattctgatgtagcaaggactccaccttcgaaaagt
tgcgcaattacttctgctatagcaacaccgtgtggaagccatccaatccctgctccactg
aatctttcacctcatagtttgtctggtacttcaacacctccaattgttcttccaggttca
agttctgctcgaagtgttttggaaaacacaggcaccaccaatccttcatctcctgtaaat
ttgccaaatgatacaaaagaagaagatatcacaagcttccctggccgtaggccttctcca
tctcttactgatactggtgtacgaggcattgctagaggaggcctctcaggtcagccttca
tctagtattccccttgtttctggaagtatggcttctggcaatggagcccttggtgtggtc
ccttcagtctctgacatggcaaaaagaactattttggggactgatgaaagacctgggaac
agtagcatggtgcaatctttggtatcccctctcagtaacagaatgatgttgcctcagaca
gccaaggctaatgatggaggtgcatctgttgattctagtaatcctagtgaatctgctgga
atacctggcagagttttttccccttcaatggtttctggtatgcagtggaggcctggaagc
tcctttcagaatcaaaatgacccggggcagtttcgtggaagaactgagatagcacctgat
atgagggaaaaatatttgcaacggcttcaacaagtgcagcaacaaggccatagcaacctg
cttggtgtgcctcctctcgctggaggaaatcttaagcagttttctgcacaacaagcccca
ctcatgcagcagttcaattctcaaagctcttcactctctatccaatcgggtctaggactt
ggtggccaagcatctggttttaatagtgtaacagctgccagcttacagcagcaacaaaat
cccatccaacaacagtctagtcagcaggcattggcaacaaatgttccaaaggatggggac
attgggaatgcaaaagttgaggaacaacaaccgcgcaatttacctgatgattcaagttct
gaagctgttccaacttctgggcttgccaagaatctcatgaacgaggatgagatgaaaact
cagtatgcaattgattctccggctgctgtgtcaggctccttgacagaacctgctcaagtt
attagggatgttgatctttctcctgggcaacccttgcaatctaaccagtcttctagtgtt
cttggcgttattggcaggagaagtgttactgattttggtgccattggtgacaacctcagt
ggctcaatgaatactggaggaatgcatgatcaactatacaatttgcagatgcttgaggct
gcatactataaaattccccaacctaaagactcagaacgtgctaggagctacactccaaaa
caccctgctgcaacacctgctagctaccctcaagttcaggcaccgattgtgaataatcct
gcattctgggaacgcataagcttagatggctatggcactggcactgatacactgttcttt
gcattttattatcagcagaatacttaccaacaatatctggccgcaaaggaactgaagaag
cagtcttggagataccacagaaaatacaacacatggtttcagcggcatgaggaaccaaaa
atcgccactgatgaatttgaacagggaacctatgtatactttgattttcacatagcaaat
gatgaccaccaacatggatggtgtcagagaattaagacggagttcacatttgagtataac
tatcttgaagatgaacttatttgctga
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