Gossypium hirsutum (upland cotton): 107888562
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Entry
107888562 CDS
T04793
Name
(RefSeq) probable ubiquitin conjugation factor E4
KO
K10597
ubiquitin conjugation factor E4 B [EC:
2.3.2.27
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi04120
Ubiquitin mediated proteolysis
ghi04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
107888562
04120 Ubiquitin mediated proteolysis
107888562
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ghi04121
]
107888562
Enzymes [BR:
ghi01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
107888562
Ubiquitin system [BR:
ghi04121
]
Ubiquitin ligases (E3)
U-box type E3
107888562
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ufd2P_core
U-box
Motif
Other DBs
NCBI-GeneID:
107888562
NCBI-ProteinID:
XP_016668204
UniProt:
A0A1U8HXV3
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Position
A09:complement(2996755..3003336)
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AA seq
1046 aa
AA seq
DB search
MATQKPQRTPEEIEDIILRKIFLVTLKENPSSSSSDSRVVYLEMTAAEILSEGKSLLLSR
DLMERVLIDRLSGEFPNSEPPFNYLIGCYKRAHEEIKKISNMKDKTLRSEMESAAKQAKK
LAVSYARIHLGNPDLFSNGNLKDSNPKAGSSLSSSSPLLPLVFAEVSSGLMLDGFGGNDL
GSGVDCPPGFLDDFFKDSDFDTLDPILKGLYEDLRGSVLKVSALGNFQQPLRALLYLVKF
PVGAKSLVNHPWWIPKGVYLNGRVIEMTSILGPFFHVSALPDHTIFKSQPDVGQQCFSDA
STRRAADLLSSFTTIKTLMNTLYDGLAEVLLCLLRNFETRDSVLEYLAEVINKNASRAHI
QVDPISCASSGMFVNLSAVMLQRSEPFLDTNLTKRDKIDPTYVFYCNRLDLRGLTALHAT
SEEVAEWIDKDNPVKTDGSGLNNDGENSLRQLQVASSSGSTPNVKPTRSSSGKANYHFIC
ECFFMTARVLNLGLLKAFSDFKHLVQDISRSEDTLATLKAMQGQAPSPQLELDISRLEKE
IELYSQEKFCYEAQILRDGALIRQALSFYRLMVVWLVDLVGGFKMPLPPTCPMEFASMPE
HFVEDAMELLIFASRIPKALDGVVLDDFMNFIIMFMASPQFIKNPYLRAKMVEVLNCWMP
RRSGSSATSTLFEGHQLSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLW
QVPSHRNAWKQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKELEAEMSNTAEWE
RRPAQERQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQITAPFLLPEMVERVANMLN
YFLLQLVGPQRKSLTLKEPEKYEFRPKELLKQIVRIYVHLARGDAKNIFPSSISSDGRSY
NEQLFSAAADVLRRIGEDGRIIQDFIELGAKAKAAASEAMDTEAALGDIPDEFLDPIQYT
LMKDPVILPSSRITIDRPVIQRHLLSDSTDPFNRSHLTSEMLIPNTELKARIEEFIRSQE
LKKHEGLNMQSSKGTIQPTSGEMLID
NT seq
3141 nt
NT seq
+upstream
nt +downstream
nt
atggctacgcaaaaaccccaaagaaccccagaagaaatagaagatataatcctaaggaag
atcttccttgtaacccttaaagagaacccatcatcttcttcttctgattcaagggttgtt
tacctagagatgaccgcagctgagatcttaagtgaaggcaaaagtcttttactttcacgt
gatctaatggaaagggttttaattgatcgtctgtctggtgaattccctaattcagaaccc
ccttttaattatctcattggttgttacaagcgagctcatgaagaaatcaagaagatttcc
aacatgaaagacaagacgctgcgttctgagatggaatctgctgctaaacaggctaagaag
ttggctgtttcatatgctaggattcatctgggaaatcctgatttgttttctaatgggaat
ttaaaagatagtaaccccaaagccggttcttctttgtcttccagttcccctttgcttccc
ttagtttttgctgaagtttcaagtggactaatgcttgatgggtttggagggaatgattta
ggaagtggggtggattgtccacctgggtttttggacgacttctttaaggattcagatttt
gatactttggatcctatcttaaaaggtttgtatgaggatttaagagggagtgttttgaaa
gtttcagctttgggaaattttcagcaacctttgagggctttgttgtatttggttaagttc
cctgttggtgctaagagcttggttaatcatccatggtggattcctaaaggagtttacttg
aatggacgtgtcatcgaaatgactagcattttgggcccctttttccatgttagtgctctg
cctgatcataccattttcaagagccagcctgatgttggccagcagtgcttctcagatgca
tcaactagacgagcagctgatttgttatcttcattcaccacaataaagactctcatgaat
actttatatgatggtctggctgaagttcttctttgtctccttagaaacttcgagactcgt
gacagtgttctcgagtatcttgcagaagtcatcaataaaaatgcatcaagggcccatata
caggtggatcctatatcttgtgcaagttccggcatgtttgtcaatctcagtgctgttatg
ctccaacgttcagagccatttttggatacaaatttaacaaaaagagataaaatcgatcca
acctatgtcttctactgtaaccgtttggatttgagggggttaactgctctgcacgcaaca
tcagaagaagtggctgaatggattgataaagataatcctgtgaaaactgatgggagtgga
ctaaataatgatggtgaaaatagtttgaggcaattgcaagtagcatctagttccggaagt
accccaaatgtgaagccaacccgaagtagtagtggaaaagctaattatcatttcatttgt
gaatgcttctttatgactgctagggtactcaacttgggcctcctaaaggcattttcggac
tttaagcatctagtccaggacatttcaagaagtgaagacacacttgccaccttaaaagct
atgcaaggacaggcaccttctccacaactggagcttgatatatcgaggcttgagaaggaa
attgaattgtattcacaggaaaaattctgttacgaggctcaaattttgagggatggggca
cttattcgacaagcactttcgttctatcgactaatggtggtttggttagttgacttggtt
ggtggatttaaaatgcctctgccacctacatgtccgatggaatttgcttcaatgccagag
cactttgtggaagatgctatggaactattaatatttgcttctcggattccgaaagctctt
gatggagttgtacttgatgattttatgaattttattattatgtttatggcaagtccgcaa
tttatcaagaacccctatctcagagcaaaaatggttgaagttttgaactgttggatgccg
cgtagaagtggttcatctgcgacatcgacactatttgaagggcatcaactgtctttggaa
tatctcgtgcggaatcttttgaagctatatgttgacattgaattcactggttctcacaca
cagttctatgataagttcaacatccgccataatattgctgaacttcttgaatatctttgg
caagttcctagtcaccgtaatgcttggaaacagattgcgaaggaagaagaaaagggtgtt
tatctgaatttcttgaatttccttattaacgatagcatctacctcctcgatgaaagtctt
aacaaaattcttgaactcaaagagcttgaggctgagatgtcaaatactgcagaatgggaa
cgcaggcctgctcaggagaggcaagagagaactcgactgttccactcccaggagaatatt
atacggattgacatgaagttggcaaatgaggatgttagtatgctggcttttacatctgag
cagattacagctccttttctactccctgagatggttgagagagtggcgaatatgttaaat
tactttttattgcaattagttggccctcaaagaaagtcgctcactctgaaagagcccgaa
aagtatgaatttcgcccgaaagagttgctcaagcagattgtccgcatatacgttcatctg
gcaaggggtgatgccaaaaacatctttccatcttccatctccagtgatggtcgatcctat
aatgaacagttgtttagtgctgcagctgatgttcttcgaagaattggtgaggatgggagg
ataatacaagattttattgagcttggtgcaaaggccaaggctgcggcttcagaggccatg
gacactgaagctgcccttggagatattcctgatgaattccttgatccaattcaatataca
ttgatgaaggatccggtgatcttaccatcttcaagaatcacaatagacaggcctgtcatc
caaagacatcttctaagtgatagtactgatccattcaaccgatctcatcttacctcggag
atgttgattccgaacaccgaactgaaggcaagaattgaagagtttattaggtcccaggag
ctgaagaagcatgaaggcttgaacatgcaaagctctaaaggaacaatacaaccaacaagt
ggagaaatgttaattgattag
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