KEGG   Gossypium hirsutum (upland cotton): 107888639
Entry
107888639         CDS       T04793                                 
Name
(RefSeq) WD repeat-containing protein 48 homolog
  KO
K15361  WD repeat-containing protein 48
Organism
ghi  Gossypium hirsutum (upland cotton)
Pathway
ghi03460  Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:ghi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03460 Fanconi anemia pathway
    107888639
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ghi03400]
    107888639
DNA repair and recombination proteins [BR:ghi03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   FA (Fanconi anemia) pathway
    Other FA pathway factors
     107888639
SSDB
Motif
Pfam: WD40 WD40_Prp19 DUF3337 WDR55 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_TEP1_2nd EIF3I Beta-prop_EML Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 Beta-prop_WDR75_1st Beta-prop_SPT8 Beta-prop_TEP1_C WD40_MABP1-WDR62_2nd Beta-prop_SCAP NBCH_WD40 Beta-prop_WDR90_POC16_2nd Beta-prop_IFT122_1st Beta-prop_DCAF4 Beta-prop_WDR75_2nd Beta-prop_RIG_2nd WD40_RFWD3 RAWUL Beta-prop_EIPR1 Beta-prop_DCAF12 WD40_MABP1-WDR62_1st ANAPC4_WD40
Other DBs
NCBI-GeneID: 107888639
NCBI-ProteinID: XP_040937644
LinkDB
Position
A11:110146475..110161346
AA seq 763 aa
MHRVGSGGNNTNSNRPRKEKRLTYVLNDTADTKHCAGINCLAVLKSSALYGCNYLFTGSR
DGTLKRWALGENAATCSATFESHVDWVNDTVIAGDSTLVSCSSDTTLKTWNCLSEGTCTR
TFRQHSDYVTCLAAAEKNTNVVASGGLGGEVFVWDIEAAVTPVSKSSDVVEDDCSNSMNG
SANLLPISSPRTISSSNSIRTHTTQGHGYVPIAVKGHKESVYALAMNDSSSLLVSGGTEK
VVRVWDPRTGSKNMKLRGHADNIRALLLDSTGRYCLSGSSDSMIRLWDLGQQRCVHSYAV
HTDSVWALASTPTFSHVYSGGRDLSLYLTDLTTRESLLLCTKEQPILQLALHDDSIWVAT
TDSSVCRWPAEGRTPQNVFQRGGSFLAGNLSFSRARVSLEGSTPAPVYKEPIFTIPGTPA
IVQHEILNNRRHVLTKDAAGSVKLWEITRGVVIVDYGQVSFDEKKEQLFEMVSIPAWFTA
DTRLGCLSVHLDTPQCFTAEMYSVDLNITGKPEDDKVNLARETLKGLLVHWLAKRRQRHD
FQASANGDVVSGKDMTARSSAHSRIEVDGNAENDSLVYPPFEFSTVSPPSVITEGSQGGP
WRKKITELDATEDEKDFPSWVLDCVLNNRLPPRENTKFSFYLYPCEGSAVQILTQGKLSA
PRILRMHKVVNYVIEKLVLDKPIDSLNTDGTYAAGLGAQPQHSASGEGSLRSGLKPWQKL
RPSIEILCNNQVLSPEMSLATVRTYIWKRPEDLVLNYRMIQGK
NT seq 2292 nt   +upstreamnt  +downstreamnt
atgcaccgagtgggcagtggggggaacaataccaattctaaccgcccacggaaagaaaaa
aggttgacatatgtactgaatgataccgccgacacaaagcattgtgcaggcataaattgt
ttggctgtgctaaagtcatcagccttgtatgggtgcaactatcttttcactggtagccgt
gatggcacacttaagagatgggcacttggtgaaaatgctgccacatgctctgctacattt
gagtcgcatgttgattgggtaaatgatactgttattgctggtgatagtacacttgtttca
tgctcttcagacactacattgaagacgtggaattgcttgtctgaaggaacttgcaccagg
actttccgtcaacactctgactatgttacatgtctagccgcagctgaaaaaaataccaat
gtggttgcctctgggggtcttggaggggaagtttttgtgtgggatatagaagctgcagta
actccagtctctaaatccagtgatgtagtggaagatgattgttccaacagtatgaatggt
tcggcaaatttattaccgatatcaagtccgagaacaattagctcaagtaacagcattagg
acgcacacaactcagggtcatggatatgtccccattgctgtcaaaggtcacaaagaatcg
gtctatgcattggcaatgaatgatagcagctcccttcttgtctctggtggaactgagaag
gttgtgcgagtttgggatccaagaactggttcaaagaatatgaaattaagagggcatgca
gataacattagggctttgcttctggattctactggcagatattgtttgtcagggtcctcg
gattctatgatcaggctgtgggaccttggtcaacagcgttgtgtgcattcatatgctgtg
cacacagattctgtttgggcacttgcaagcaccccaacatttagtcatgtttatagtggt
ggtagagatctttctttatatctgacagacttgacaacaagagagagtcttttgctttgc
accaaggaacaaccaattttgcagttggcattgcatgatgatagtatatgggttgcaact
acagattcttcagtttgtaggtggcctgctgagggacggactcctcagaatgtcttccaa
agaggtggttcatttttggctggaaacttgtctttttcgagggcaagagtttcattagaa
gggtctaccccagcccctgtttataaagaaccaatctttaccattcctggaactccagca
attgttcagcatgaaattttaaataacagaaggcatgtattgacaaaggatgctgctggt
tcagtaaagctctgggagataaccaggggtgttgtgattgtggattatggacaggtttca
tttgacgagaaaaaggaacagctttttgagatggtaagcattcctgcatggttcactgcg
gatacccggcttggatgcttgtctgttcatttagacacgccccaatgctttactgcagag
atgtattctgtagatctgaacataactggcaagcctgaggatgataaggttaatctagct
cgtgaaacccttaaaggtcttttggttcattggttggccaaaagaaggcaaagacatgac
ttccaggcttctgctaatggagatgttgtatcaggaaaagatatgactgccagaagttct
gctcattcaaggattgaggtagatggaaatgctgaaaatgactcattggtctatcctcct
ttcgagttttctactgtttcccctccctcagttattaccgagggttcccaaggaggtcct
tggagaaagaaaattactgaattggatgcaactgaggatgagaaggacttcccttcgtgg
gttttggattgtgtattaaataatcggctaccacctagagaaaacaccaagttcagcttc
tatctttatccatgtgaaggttcagctgttcagatactgacacaaggaaagttaagtgct
cctcgcatattgagaatgcataaggttgttaattatgtcatagaaaagctggtgcttgac
aaaccaattgatagtttaaataccgatgggacatatgctgctggacttggagcacaaccg
caacattcagcaagtggagagggatctcttcggtctggattgaagccttggcaaaagctt
cggccttctattgagattttatgcaataatcaggtactgtctccggagatgagcttagcc
actgtgcggacttacatatggaagagacctgaggacttggtacttaattatagaatgatt
caaggcaagtga

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