Gossypium hirsutum (upland cotton): 107888662
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Entry
107888662 CDS
T04793
Name
(RefSeq) zinc finger CCCH domain-containing protein 41-like
KO
K13192
RNA-binding protein 26
Organism
ghi
Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ghi01009
]
107888662
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107888662
03041 Spliceosome [BR:
ghi03041
]
107888662
Protein phosphatases and associated proteins [BR:
ghi01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
107888662
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
107888662
Spliceosome [BR:
ghi03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
107888662
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
Nup35_RRM_2
RRM_Nup35
PHM7_cyt
zf_CCCH_4
CCDC113_CCDC96_CC
zf-CCCH
Motif
Other DBs
NCBI-GeneID:
107888662
NCBI-ProteinID:
XP_016668319
UniProt:
A0A1U8HY66
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All DBs
Position
A09:complement(9589227..9595095)
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AA seq
934 aa
AA seq
DB search
MELKVLSPKPGGTSAPDCISDPEEKEVSDEEDDDRNHKHRRRDTCSQSLERDSTDPVFTR
PYRKRNKPLENGHNESQAAETCKNSNSLLLEKDLKSKFDRRYPGLASLPRGHLDLNQRIR
SNQTFSGDSGPGRGRGRDNSSWNHRDSRFNSVDIAYQLVQPGSVAPSLFAGRGLPNLSNT
QAPSRSAFGIMPGIPNGSLDTLHSIGLQGVLRPPMNSSLNMVIPRQRCRDFEERGFCLRG
DMCPMEHGVNRIVVEDVQSLSQFNLPVSVPSAQILATSAGPGPLPSVFPPSTTLVNGKGI
HSKSSKSGMTEDATGLNCAYTATTSAGGDLYDPDQPLWNNNGPEASAALTGQCSPKINEM
EPLRNDDISDLHHGMLCESADNELPIRSSRSQGMNLSVWGRIGSSRSRIEAKDKIDHLPS
DHLENETKKEQEPFPSSQDTSCQVKRICSEDDGSKVMDLSLKSQIYSHSRRKPTQKALRT
LFVNGIPQKCNKREALLSHFRKFGEVVDIYIPQNSERAFIQFSRREEAEAALKAPDAVMG
NRFIKLWWANRDSIPDDGVNSGMPVTPSGLTASGVPPQPVANKGKDNLQCIAQKSSVVHG
TDVPSLKSPKSVSTNGPQAPPLLQKKLESLEQMKEELRKKQEMLEQKRNDFRRQLNKLEK
QSSIVKGDPLSEPAAKRHKVGSAPDPAKALIPSSSEPSASAAKTCTKEMTDKNKSMENVV
SRSPKSSTTMALQESMGSKQQYCKPRQSAPMRHPFLMNKYRLDNRPTAFRVIPPLPSGFA
DVDVLKEHFLQYGDLFSVELQDVENEDNDDIGSEALKKCSALITYSTRQLAERAYVNGKC
WQGNNLQFKWLIYNTNPSSKETSSSAPKQTLEADVTKEEKTSHGVAQEVVGSGNGESENS
DRESFVEHMELAEVSEQSPSPTSSMKESPKGDTS
NT seq
2805 nt
NT seq
+upstream
nt +downstream
nt
atggagctgaaagtcttatcgcctaagcccggtggtacttctgctcctgattgcataagt
gatccggaggagaaagaagtcagtgatgaggaagatgatgatcgcaaccataagcatcgt
aggagggatacatgttctcaatcattagagagagattctacagatcctgtatttacaagg
ccatacagaaagcgcaataaacctttagaaaatgggcataatgaatctcaagcagctgaa
acctgcaaaaattctaacagtttgcttctagaaaaagacttgaaatctaagtttgacaga
agataccctggattagcatcacttcctcgaggacatttggatctgaaccagagaattagg
tctaaccaaacattcagtggagattctggtcctggtcggggaagaggaagggataactct
tcttggaatcaccgtgattcaaggttcaactctgttgatattgcttatcaattggttcag
ccaggatctgttgctccaagtctctttgccggaaggggattgcctaatctttcaaacaca
caagccccatcacggagtgcctttggcattatgccaggaataccaaatggcagccttgat
acactccactctattggtttacaaggggtgcttaggccaccaatgaattcttcattaaat
atggtcattcctcgccaacgctgtagagactttgaggagcggggattttgtctaagagga
gacatgtgtccaatggagcatggtgtcaatcgtattgttgttgaagatgttcagagtctg
tcacagtttaaccttcctgtttcagttccaagtgcacaaatattggcaacatcagctgga
cctgggccgctaccttctgtttttcctccttcaaccacattggtgaacggcaagggtata
catagcaaaagtagcaagtctggaatgactgaggatgctacaggtttgaattgtgcatat
actgctactactagtgcaggtggagatttgtatgatcctgatcaacccttgtggaataat
aacggcccagaagcatcggcagcactcacaggacagtgttcacccaagattaatgaaatg
gaaccattgcgaaatgatgatatctctgatcttcatcatggcatgttatgtgagagtgct
gataatgaattgccaattagaagcagcaggtcacagggcatgaatttatcagtttggggt
agaatcggtagctccagaagtagaatagaagcaaaagataaaattgatcatttaccctca
gaccatcttgagaatgaaaccaagaaggaacaagaaccatttcctagctcacaggacact
tcctgtcaagttaagcggatctgcagtgaggacgatggctccaaagttatggatttgtca
ttgaagtcacagatttattcgcatagtcgcagaaaacctactcaaaaggcactccgtaca
ctgtttgtcaatgggattccccagaaatgcaacaaaagagaggctcttctgtctcatttt
cgtaaatttggagaggttgttgacatttatattccacaaaatagcgaacgggcattcatc
cagttttcaaggagggaagaggcagaagctgctcttaaggcacctgatgctgtaatgggt
aaccgctttattaagctctggtgggctaatagggatagcatacctgatgatggcgtgaac
agtggcatgccagttactccaagtggtctaacagcttctggtgttccacctcaacctgtt
gctaataaaggaaaggataatcttcaatgtattgctcagaagagtagtgttgtccatggc
actgatgtgccttctttgaaatcccctaaatctgttagtacgaatggtccccaggctcca
cctctgttgcagaaaaagttagagtctctggagcaaatgaaagaggaactacgcaagaag
caggaaatgctggagcagaagcggaatgacttccggcgccagttgaacaaacttgagaaa
caatcaagtattgtcaagggtgatccactgtctgagccagcggctaagaggcacaaggta
ggaagtgcacctgatcctgcaaaagctttgattcctagttcctctgaacccagtgcttct
gcagcaaaaacatgcactaaagagatgacagataaaaacaaatcaatggaaaatgttgtt
tctcgaagtccaaaatcaagtaccaccatggcattgcaggaatctatgggctcaaagcag
cagtactgtaagcctcgtcagtctgcacccatgaggcatccattcctgatgaataaatac
agattggacaaccgacctactgcttttagagttattccgccattgccttctggttttgca
gatgttgatgttttgaaggagcacttcttacaatatggagatcttttctctgtggagcta
caagatgtggaaaatgaagataatgatgatatcggatctgaggcattgaagaaatgctca
gctcttataacatacagcacacgccaattggcagaaagggcttatgtaaatggtaaatgc
tggcaaggcaacaatttgcagtttaaatggttgatatataacactaaccctagtagcaaa
gaaacttcatcttccgcaccaaagcagactttagaagccgatgtcacaaaagaagaaaaa
acatcacacggcgttgcccaagaagttgttggttcaggcaatggggaatccgagaattcg
gatagagagagtttcgttgagcatatggaattggctgaagtttcagagcagagtccatcc
ccaacatctagcatgaaagagtcaccaaaaggcgacacgagttga
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