Gossypium hirsutum (upland cotton): 107888678
Help
Entry
107888678 CDS
T04793
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 14
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107888678
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ghi03041
]
107888678
03009 Ribosome biogenesis [BR:
ghi03009
]
107888678
Enzymes [BR:
ghi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
107888678
Spliceosome [BR:
ghi03041
]
Complex A
U1 snRNP components
U1 related factors
107888678
Complex B
107888678
Ribosome biogenesis [BR:
ghi03009
]
Eukaryotic type
Pre-60S particles
Helicases
107888678
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
107888678
NCBI-ProteinID:
XP_016668335
UniProt:
A0A1U8HQM7
LinkDB
All DBs
Position
A09:8984978..8989900
Genome browser
AA seq
686 aa
AA seq
DB search
MAATATASFAGPTFAPPDPTLPKPWKGLVDGKTGYLYFWNPITNVTQYERPTIVDSVPKS
SPVRSSIQIQQYSEVRYGYNPDKENDRYGRGNNDASKPEPVSRFNQNASGGPILSHNTPN
GTHGSVVGGSSAGRHGLVAEGSNLSGDAYRHQHEITVTGDEVPSPFSSFEATGFSSEILR
EVHSAGFSAPTPIQAQSWPIALQGRDIVAIAKTGSGKTLGYLIPGFMHLKQCRKDPRMGP
TVLVLSPTRELATQILDEALKFGKSSRISCTCLYGGAPKGPQLREIERGVDIVVATPGRL
NDILEMSTISLRQVSYLVLDEADRMLDMGFEPQIRKIVNEVPSCRQTLMYTATWPKEVRK
IAADLLGNPVQVNIGNIDELVANKSITQYVEVLSPMEKHRRLEQILCSQESGSKIIVFCS
TKKMCDQLARNLSRQFGAAAIHGDKSQADRDYVLNQFRTGRSPVLVATDVAARGLDIKDI
RVVINYDFPTGVEDYVHRIGRTGRAGATGLAYTFFVDQDSKHASDLIKVLEGANQLVPAE
LRDMASRGGLMGRPRRWAPSSGGFGRGRGGRTDLGYGGWDSGRGGRGISTSSTWLEKSGG
GRGNDHESRDRYNRGFHGSNDRRRSRSRSPAGWGDRHKNTGHDRSRSCSADRYDKGPRLH
EEMIKRDRSPPLQQRMPPNSNGFRGS
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
atggctgctactgcaactgcttcttttgcgggcccaacatttgctccgccagatcccact
cttcccaaaccatggaaaggcctagttgatggtaaaactggttatctctacttttggaat
ccaataaccaatgtcacccaatatgagaggcccacaattgtagattctgtcccgaagtct
tccccagtgcgttcttcaattcagattcagcaatattctgaagtgcggtatgggtataat
cctgacaaggaaaatgatcgttatggaagaggcaacaatgatgcatcaaaacctgagcca
gtatcaaggtttaaccagaatgcaagtggtggacctattctttcccataatacacctaat
gggactcacggctctgtggttggaggatcttctgctgggagacatggattagtggctgag
ggaagtaatttgtctggtgatgcttatcgccatcagcatgagataactgtaactggagat
gaagtgccttcacccttttcatcatttgaagctactggcttttcttctgagatacttaga
gaggtacacagtgctgggttttctgctccgaccccaatccaggctcagtcgtggccaatt
gcattgcaaggtagagacattgtggccattgctaaaacgggttctgggaaaactttgggt
tacctaattcctggatttatgcatctcaagcaatgccgtaaagatcctcgaatgggtcca
actgtgttagtattgtcaccaacgagggagttggctactcagatactagatgaagctctc
aagtttgggaaatcctcaagaattagttgcacgtgtttgtatggaggagcaccaaagggt
cctcagttgagagagattgagagaggagtagatattgtggttgctactcctggccggtta
aatgatattctagagatgagcacaatcagccttcgtcaagtttcttaccttgtgttagat
gaggctgatcgcatgttggacatgggttttgaacctcaaataaggaagattgtgaacgaa
gtgcctagttgcaggcagactctcatgtacacggcaacatggccgaaggaagtccggaaa
attgctgcagatctactcggaaatcctgttcaggtcaacattggcaatatcgatgagctt
gtggcaaacaagtctattacacagtatgttgaagtattatcaccaatggaaaaacacaga
agattggaacagatactgtgctcccaagaatccggatccaaaatcatagttttttgttca
accaagaagatgtgtgatcaactcgcccgcaacctcagtcgacagtttggagctgctgct
attcatggagacaaatctcaggctgacagggactacgtactgaatcagtttcgaactggg
aggtcaccagtgcttgttgctactgatgttgctgctcggggtttggacattaaagatatc
agggtagtaataaactatgacttccccactggagttgaagattatgttcataggattgga
aggactggaagggcaggtgcaactggattggcttatacattcttcgtcgatcaggattcg
aagcatgcttcagatctcatcaaagttctggaaggagcaaaccagctggtgcccgctgaa
cttcgtgatatggcttcacgtggtggtttgatgggaaggcctaggcgttgggctccaagt
tctggtggctttggtaggggacgtggtggacgtactgatttgggctatggtggctgggac
agtggaaggggtggtcgtggaatttctacatcctctacctggcttgagaaaagcggcgga
ggacgtggaaatgatcatgagtctcgtgataggtacaatcgtggtttccatggtagtaat
gataggagacgaagtcgcagtcgaagtcctgctggttggggtgatcgtcataaaaacact
ggtcatgatcgtagccgtagttgtagtgctgacaggtatgataagggtcctcgcttacac
gaggagatgattaaacgtgatcggtcaccgccactgcaacaacgcatgccccctaacagt
aatgggtttcgagggagctga
DBGET
integrated database retrieval system
