Gossypium hirsutum (upland cotton): 107888690
Help
Entry
107888690 CDS
T04793
Name
(RefSeq) probable RNA helicase SDE3
KO
K18422
helicase MOV-10 [EC:
5.6.2.5
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107888690
03036 Chromosome and associated proteins [BR:
ghi03036
]
107888690
Enzymes [BR:
ghi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.5 RNA 5'-3' helicase
107888690
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
107888690
Chromosome and associated proteins [BR:
ghi03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Other miRNA pathway proteins
107888690
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_12
AAA_11
MOV-10_beta-barrel
AAA_30
AAA_19
UvrD-helicase
ResIII
ATPase_2
SLFN-g3_helicase
AAA_22
AAA_16
AAA
Helicase_RecD
Mg_chelatase
AAA_2
PH_RDR2
AAA_24
DEAD
AAA_5
Motif
Other DBs
NCBI-GeneID:
107888690
NCBI-ProteinID:
XP_016668355
UniProt:
A0A1U8HQP1
LinkDB
All DBs
Position
A11:complement(109949171..109953505)
Genome browser
AA seq
859 aa
AA seq
DB search
MSSGWNDGWGDECSVISDKGEIGFIDFADDKSVQSYDINEEGPVIISVPFPFSQGKPQSI
LVGQTSKWPIMLENTIDEPVELWGVRIFCSNPADSFTLSLMEPPSADSKSEQSQGFLEGF
SLEDRVLQSRETLTIWLSCKPKDMGLHTTVVHFDVDDNRIERVVFLLAEDNVSQSLASTK
PYRRAPRRRNHFAVDEYVVSSRPAKPKTRGCKSKLDEYPIPKNIRESLENKHVPDILAEG
LTKENYAGFFSTLLVMEELHLEEEMRSHNMECVMMRRKGPQFVALEVPGLAERRPSLVHG
DHIFAKIASNGSDSLVYQGYIYRVEADEVLLKFASQFHTLHRDGNLYNVHFTYNRLNMRR
LYQAIEAAQTLQDNLLFPSESTKRTSVKNAPIVPCTGTLNVEQMHSVEMILACKGAPPYV
IYGPPGTGKTMTLVESILQIYMTRKNGRILVCAASNSAADHILERLIGNENVKVKESEIF
RLNATSRPYEDVPLDHIRFSYFELSVFKCPPLEALNRYRIIISTYMSSTLLYGEGVNRGH
FSHIFLDEAGQASEPESMVPIANFCRKETVVVLAGDPKQLGPVVFSKDAESLGLGKSYLE
RLFECESYCNEDANFVTKLVRNYRCHPAILDLPSRLFYKGQLIACKDDNSFSIISNLDFF
PNKEFPVLFFGIQGCDEREGNNPSWFNRIEVSKVVDIINKLRGSSDLNESDIGIITPYRQ
QVLKIKKVLETWDLLDVKVGSVEQFQGQEREVIIVSTVRSTVKHNEFDRTYCLGFLSNPK
RFNVVITRAKSLLIIVGNPHIVCKDPYWEKLFWHCHENNSYQGCPPPERVNHEFEESCSE
TGLSNEVEGSGWNEGTWDC
NT seq
2580 nt
NT seq
+upstream
nt +downstream
nt
atgagttcgggttggaacgatggttggggtgatgaatgctcggtcataagtgataaaggt
gagatcgggtttattgactttgctgatgataagtccgtgcaaagttatgacataaatgaa
gagggaccggttattatctcagttccatttcctttctctcaagggaagcctcaatccatt
cttgttggccaaacttcaaagtggccgattatgttagagaacactattgacgagcctgta
gaactttggggagtgagaattttctgctcaaatccggcagattcgtttactttgtctctc
atggagccaccttcagctgattcaaagtcagaacaaagccaaggattcttagaaggattc
tctcttgaggatcgagtacttcaatcccgggaaactcttaccatttggctgtcttgcaaa
ccgaaagacatgggtttgcacacaactgtagtacactttgatgtagatgataataggatt
gaacgagtagtgtttctattggctgaagataatgtctcccaatctctcgcttctactaag
ccttacaggagagctccaagaagaagaaatcactttgctgttgacgagtatgttgtttcc
tctcgcccagctaagccaaaaacccgtggatgcaaatctaagcttgatgaatatccaatc
ccgaaaaatatcagagagtcattagagaataagcatgtgcctgatattctagcagaaggt
ttgacgaaggagaactatgctggtttcttcagtacattgcttgtaatggaagagctgcat
ttagaggaagaaatgaggtctcataacatggaatgtgtcatgatgaggaggaaaggaccg
caattcgtagctcttgaggtccccggattagctgagaggaggccgtcacttgtacatggt
gatcatatttttgcgaagattgcctccaatggttcagattctctagtatatcagggctac
atctatcgtgttgaggctgatgaagtactcttgaaatttgcaagccaatttcacaccctt
caccgggacggaaacttatacaatgttcacttcacatataatcggctgaatatgaggagg
ttgtatcaagctattgaagctgcacagactttacaagacaatcttctatttccgtcagaa
tcaaccaaacggacatcggttaaaaatgctccgattgtgccttgtaccggcacactgaat
gtggaacagatgcattcggtcgagatgatacttgcttgcaagggagctcctccctatgtg
atttatggccctcctggcactggtaaaaccatgactttggtggaatcaattctacagata
tatatgacaagaaaaaatggtcggattctagtatgtgcggcttcaaatagtgctgcggat
catatattagagagacttatcggtaatgagaatgtgaaagttaaagagagcgaaatattc
aggctaaacgctactagtcgtccctatgaggatgttccacttgatcatattcgcttttcc
tacttcgagctgtctgttttcaaatgtcctcctttggaagctctcaaccgctatagaatt
atcatatcaacttatatgagttcaactctactttatggagaaggtgtgaatcgtggccat
ttctcccacattttccttgacgaggctggccaagcctcggaaccagaaagcatggttcct
atagctaacttttgccgaaaggaaacggttgtggtccttgctggagatccaaagcagctt
ggtccagttgtattttcaaaagatgcggagtctcttggattgggaaaatcttatcttgaa
aggcttttcgagtgtgaatcatactgcaacgaagatgctaattttgtaacaaagttggtt
aggaattaccgttgtcatccggcaattctcgatctcccttcaaggcttttctacaaaggc
cagctgattgcatgtaaagatgataattctttctcaataatttcaaatttggatttcttt
ccaaataaagaatttccggtcctattcttcggtatccagggatgtgacgagagagaaggc
aataatccgtcatggtttaacagaattgaagtaagcaaagttgttgacatcatcaataag
ttaagaggaagctccgatctaaatgagtcagatattggaataataacaccatatcgccag
caggttctcaagatcaagaaagtgctcgaaacctgggacttgctagatgtaaaagttggc
agtgttgaacaatttcagggccaagaaagggaagtcattattgtgtctacggtaagatca
acagtcaaacacaatgagttcgacagaacttactgtctgggatttctgagcaatccaaaa
aggtttaatgttgtgattacccgggccaaatcattgctcatcattgtcggaaatccacac
atcgtttgtaaggatccttactgggaaaaactgttttggcattgtcatgaaaataactca
tatcagggctgccccccaccagaaagggtgaaccatgagtttgaagaatcatgttctgag
actggattaagtaacgaagtagaaggttcaggttggaatgaagggacatgggattgttaa
DBGET
integrated database retrieval system
