Gossypium hirsutum (upland cotton): 107888755
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Entry
107888755 CDS
T04793
Name
(RefSeq) DNA mismatch repair protein MSH2 isoform X1
KO
K08735
DNA mismatch repair protein MSH2
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
107888755
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ghi03400
]
107888755
DNA repair and recombination proteins [BR:
ghi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
107888755
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_II
MutS_I
Motif
Other DBs
NCBI-GeneID:
107888755
NCBI-ProteinID:
XP_016668437
UniProt:
A0A1U8HQV9
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Position
A09:complement(41890094..41898348)
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AA seq
943 aa
AA seq
DB search
MDENFDEQNKLPELKLDAKQAQGFLSFFKTLPNDPRAVRFFDRRDYYTAHGENATFIAKT
YYRTTTALRKLGSGSNGLSSVSVNKNMFETITRDLLLERTDHTLELYEGSGSNWRLVKSA
SPGNLSSFEDVLFANNEMQDTPVVVALLPNFRENGCTVGFSYVDLTKRILGLAEFLDDSH
FTNVESALVALGCKECLLPLESGKSSECRTLSDALTRCGVMVTERKKTEFKARDLVQDLG
RLVKGSIEPVRDLVSGFEFAPAALGALLSYAELLAVEGNYGNYSICRYNLGSYMRLDSAA
MRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVSEINSRLDLVQAF
VEDTELRQDLRQHLRRISDIERLMRNIQRTRAGLQHIVKLYQSSIRVPHIKSALEKYDGQ
FSSLIKERYLDPFELLTDDDHSNKFIALVETSVDLDQLENGEYMISPSYDDALATLKSEQ
ESLERQIHNLHKQTAFDLDLPVDKALKLDKGTQFGHVFRITKKEEPKVRKKLSTQFIVLE
TRKDGVKFTNTKLKKLGDQYQKVLEEYKNCQKELVNRVVQTTATFSEVFEHLAGFLSELD
VLLSFADLASSCPTPYTRPRITPPDVGDIVLEGSRHPCVEAQDWVNFIPNDCRLVRGKSW
FQIITGPNMGGKSTFIRQVGVNILMAQVGCFVPCEKASISVRDCIFARVGAGDCQLRGVS
TFMQEMLETASILKGATENSLVIIDELGRGTSTYDGFGLAWAICEHIVEAIKAPTLFATH
FHELTALAHENGNYELQKKQIVGVANYHVSAHIDSSSRKLTMLYKVEPGACDQSFGIHVA
EFANFPESVVALAREKAAELEDFSPTSIISTDAGQEQEGSKRKRGYDADDISRGAAKAHK
FLKEFAELPLETMDLKQALQQVTKLKDDLQKDANNSEWLQQFF
NT seq
2832 nt
NT seq
+upstream
nt +downstream
nt
atggatgaaaattttgatgaacaaaacaagcttccagagctcaaactagacgctaagcag
gctcaagggtttctctcatttttcaaaactctaccgaatgatccaagggctgttcggttt
tttgatcgccgggattattatactgctcatggtgaaaatgcaacctttatcgctaaaaca
tattatcgtactactactgctctccggaaactcggtagtggctcgaatggtctttcaagt
gtaagtgttaataaaaacatgtttgaaacaatcacccgtgatcttctcctggagagaaca
gaccacactctggagctctatgaaggtagtggctccaattggaggttggtgaaaagtgcc
agtcctgggaatctgagcagttttgaagatgttctctttgccaacaatgagatgcaggat
acacctgttgttgtcgcactgcttcctaacttccgtgaaaatggttgcactgttggattt
agttatgttgatttaacaaagagaatacttggtttggctgagtttcttgatgatagtcac
tttactaatgtggagtcagctttggttgctcttggttgtaaggagtgccttttgcccttg
gagagtggaaaatccagtgaatgtagaactctgagtgatgctttgaccagatgtggtgtt
atggtaactgagagaaagaaaactgaatttaaagcaagggatctggtgcaggatcttggt
aggctagtcaaaggctccattgaaccagttcgagacttggtttctgggtttgaatttgca
ccagctgctttaggagccttactttcttatgcagaattactagcagttgaaggaaattat
ggaaactatagcatttgtagatacaatctgggaagctacatgaggttagattctgctgca
atgagggcattgaatgtcctggaaagcaaaactgatgcaaacaaaaattttagtttgttt
ggtcttatgaatagaacctgtactgctgggatgggtaagcggttgcttcatatgtggcta
aaacagcctttgttagatgtaagtgagataaattcaaggctagatttggtacaggctttt
gtggaggatactgagcttcgccaagatttgagacagcatctaagaagaatttcagatatt
gaacgacttatgcgcaatattcaaaggacaagagctggtttgcagcatattgtaaaactt
tatcagtcaagtataagagttccccacattaaaagtgccctggaaaaatatgatggacag
ttttcttctttgatcaaggaaagatatttggatccttttgagctcttgactgatgatgat
cattcgaacaagtttattgctcttgttgagacttctgtcgacctagatcaacttgaaaat
ggggaatacatgatttcacctagttatgatgatgcactagctacactaaaaagtgagcag
gagtcactagagcgccaaatacacaatttacataaacaaactgcttttgatcttgatctg
ccggtagacaaggcattaaagttagataagggcacacagtttggacatgttttcagaatt
acaaagaaagaagagcccaaagtaaggaaaaagctctccacccaatttattgtccttgaa
acccgaaaggatggagtgaaattcactaacacaaagcttaaaaagttgggggaccagtac
caaaaggtacttgaggagtataagaattgtcaaaaagagctagtaaatcgagtggttcaa
actactgcaactttctctgaggtatttgagcacttagctgggtttctctctgaattggat
gtcctacttagttttgcagatttagcttcaagttgtcctaccccatacacaagacccaga
attactccaccagatgtgggggatattgttttagaaggaagtagacatccttgtgtggag
gctcaagactgggttaattttataccaaatgattgtagacttgtaagaggcaagagctgg
ttccagatcatcacgggacctaatatgggtggaaaatcaacattcatccgccaggttggt
gttaacattctaatggcacaagtaggctgttttgttccttgtgaaaaagctagcatttct
gttcgagattgtatttttgcccgtgttggtgctggtgactgccaactacgtggagtttct
acctttatgcaagaaatgcttgaaactgcatcaatattgaaaggagctactgagaattca
ttggtgatcatcgatgagttggggcgaggaacatcaacctatgatggatttggtttagca
tgggccatatgtgagcatattgttgaagcgattaaagcacctactctgtttgctacccac
ttccatgaactgactgctttagctcatgaaaatggcaattatgagttgcagaaaaaacag
atcgttggtgtggcaaactatcatgttagtgctcacattgactcatcaagtcggaaattg
acaatgctgtacaaggttgagccaggggcatgtgatcaaagttttggtattcatgtggca
gaatttgccaattttcctgaaagtgttgttgctcttgcaagagaaaaggctgctgaattg
gaagatttctcaccgacttcaatcatttcaactgatgctggacaagagcaggagggttca
aaaaggaagagagggtatgatgctgatgacatatctaggggtgctgcaaaggctcacaag
tttttaaaggagtttgctgagctgccattggagaccatggacctgaaacaggctctgcaa
caagtaaccaagctgaaggatgacttacaaaaagatgcaaacaactctgagtggcttcag
caattcttctag
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