Gossypium hirsutum (upland cotton): 107888808
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Entry
107888808 CDS
T04793
Name
(RefSeq) SWI/SNF complex component SNF12 homolog
KO
K11650
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
107888808
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ghi03021
]
107888808
03036 Chromosome and associated proteins [BR:
ghi03036
]
107888808
Transcription machinery [BR:
ghi03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
107888808
Chromosome and associated proteins [BR:
ghi03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
107888808
PBAF complex
107888808
GBAF(ncBAF) complex
107888808
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIB
Motif
Other DBs
NCBI-GeneID:
107888808
NCBI-ProteinID:
XP_016668527
UniProt:
A0A1U8HR59
LinkDB
All DBs
Position
A09:16373537..16376679
Genome browser
AA seq
527 aa
AA seq
DB search
MSVNNNNPPKSIGASSSPFGNASQAQTQAQLSAGFQNQYQLSQAQALAHAQAQAQAQLAH
AQFQAHLQAQGLSLNQAQNAGIGNLGTSSPSMSTPGSATAKRILQRPPMRPPGVPVTNTM
SPLRTMDLTTAARKKKQKLPEKQLQDRVAAILPESALYTQLLEFEARVDAALTRKKVDIQ
EALKNPPCVQKTLRIYVFNTFANQMQTIPKKPNAEPPTWTLKIIGRILEDGVDPDQPAFV
QKTNPLYPKFSSFFKRVTISLDQRLYPENHIIIWEQARSPAPHEGFDVKRKGDKEFTVNI
RLEMNYAPEKFKLSSALVEVLGIEVDTRPRIIAAIWHYVKARKLQNPNDPSCFNCDAQLM
KVFGEEKVKFTMVSQKISQHLSSPPPIHLEHKIKLSGNNPAGSACYDVLVDVPLPIQRDL
SALLANAEKSKEIEQCDEAICVAIRKIHGHRRRRAFFLGFSQSPVEFINALIESQSRDLK
LASGEASRSSERERRSDFFNQPWVEDAVIRYLNRKPGAGGSDAPGST
NT seq
1584 nt
NT seq
+upstream
nt +downstream
nt
atgtctgtgaataacaataaccctcccaagagcattggggcgtcttcgtcgccctttggt
aatgcttcacaagcacaaacacaagcacaactcagtgctggttttcaaaatcagtatcag
ctatcccaagctcaggcccttgctcatgctcaagctcaagctcaagcgcagttagctcat
gcccaattccaagcacacttacaagctcaaggtttgtcccttaaccaagctcaaaatgcc
ggcattgggaacttaggtacgtcttcgccatccatgtcgactcctggcagtgcaactgcc
aagaggatccttcaaaggccccctatgcgtcctcctggtgttcctgtgacaaatacaatg
tctcctttgagaacaatggatcttacgaccgctgcacgtaaaaagaagcagaagcttccc
gagaaacagctgcaggatagagtggcggcaattcttcctgaatctgctctgtatacccag
cttcttgagtttgaggcacgtgtcgatgctgccttaactcggaaaaaagttgacatccaa
gaagcccttaagaatccaccttgtgttcaaaagacacttcgaatatatgttttcaacacg
tttgctaatcagatgcaaacaattccaaagaagcctaatgcagagccccctacatggacc
cttaagataataggaagaatcttggaagatggggtagatccagatcaacctgcatttgtt
caaaaaacaaaccccttataccctaagttttcatctttcttcaagagagtgacaatttcc
ttggatcagagactatatccggaaaatcatatcattatatgggagcaggctcgatcgcct
gctcctcatgaaggttttgacgtaaagagaaaaggggataaggaattcaccgtgaacatt
aggttggaaatgaattatgcgccagagaaattcaagctttcttctgctttagtggaagtc
cttggtattgaggttgatacacgccccagaattatagctgcaatttggcattatgtgaag
gccagaaaacttcagaacccaaatgatccatcttgctttaattgtgatgcacaacttatg
aaagtttttggggaagaaaaagtgaaatttaccatggtttcgcagaagatatcgcagcat
ttgtcttcaccacctcctatacatttggagcataagatcaagctttccgggaacaatcct
gctgggtctgcatgctacgatgtgttagttgatgtgccattgcctatacagagggatttg
tctgctctgttagcaaatgcagagaagagcaaagagattgaacagtgcgacgaagcaata
tgtgttgccataaggaaaattcatgggcaccgtagaagacgtgcattctttctagggttc
agccaatcacctgtggaatttatcaatgctttaatcgagtctcagagccgggatcttaaa
ttggcatctggggaagctagtcgaagttctgaaagagagcgacgatcagatttcttcaac
caaccatgggttgaagatgccgttatccgttatctgaatcgcaagccaggtgctggtgga
agtgatgcaccaggaagcacatga
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