Gossypium hirsutum (upland cotton): 107888835
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Entry
107888835 CDS
T04793
Name
(RefSeq) uncharacterized protein LOC107888835 isoform X2
KO
K18730
PERQ amino acid-rich with GYF domain-containing protein
Organism
ghi
Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107888835
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
107888835
Surveillance factors
Other surveillance factors
107888835
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GYF
Motif
Other DBs
NCBI-GeneID:
107888835
NCBI-ProteinID:
XP_016668562
UniProt:
A0A1U8HR96
LinkDB
All DBs
Position
A09:31479556..31487059
Genome browser
AA seq
1703 aa
AA seq
DB search
MADGKLDLPDDLLSSKTSFDHSSLKGEAWDGNLEDKGHVGLLEGTKDQAISESNIPLSPQ
WLYSKPSDSKVLATGTSGDIRATNSLSHRTSGDSNLKDSWRLDGSQDKKDRRKTAVDLES
SRRWREEERETSLLGRRDRRKEDRRADISSMRDVSENKLTSSERWNDINSRSSGHESRRD
NKWSSRWGPEDKEKDSRTEKRTEAEKEEALTDKQAFVSGGRIASDRENDSHDKWRPRHRL
EIHAGGAASHHSAPGFGLERGRVEGSTVRFAAGRGRSNANVSLQIGRPKSASVIGSRPLD
KNKSFNTYCYPRGKLLDIYRKQKTAPNFLTVPDEMDHLSPLTQKETVEPVAFVPPDAEEE
ALLGDIWKGKTTSSGVSYNTARDTSGGKQSSTLNMEDSVESGENAAVNNIYQGNYAGTYY
ALDSQMIVTEEINSTKEGGQRRVLPSDTGVTHALISDREIDGSINDADEIKSIDKGQVSD
LKMQKLPRLEDKESSIHFGEGGELPEDSGSLFDFSSLQATLSHNQIDIKGNYEAHSLESV
IPPEDLILCYLDPQGVIQGPYLGIDIISWFEQGYFGTDLPVRLADAQDGSPFQELGDVMP
HLSMNSGSASSGSAVMRMQLPDSFEGSLGETISTSASALEFKGSDIGCDHKQSLSAVETS
GTDFQLRRLTQSYPSEYQSSEDQSLHEFVAAQEEEIIFHGRPTSAGVDPSKISGEVQGSF
GNPASHLSITDEFSKTNIPSHRDDELHPFGLLMSELRSPSGLKCSQSSNIASSIGDRGQF
LDPLLDTETNFSDHSVVRRVPEQTSFPEAWPDDYRRNALSNPNIRLGTTGGWPSSHKEHE
DNSFGLLRQLISQKLPNEPLQEENHFSHPFPYSAGFDVEHVQGFDLMLSKNLNRQRSIHH
SDPHMEHLLELQFQQQRQLELQRQQQQLELQRQQQLELQRQQQQLELQRQQQQLELQRQQ
QQLELQRQQQLELQLQQQQQQQQQQLELQRQQQLRHHQIKLLQEQQQHLQLPHSQAQQLL
LDQLLQHQIPDPGYGQQIFDAARDNIIDQVQLRRHLLAELQQNSHASRHLDSSLEQIIQA
KINQGALQGQHAEFLDFMSQAKYGNMLPSEHQLRLKQEHLQAQQLSMALRQQLGMEGNRR
LAGSLSVDDVGQFVGNPGSHHQAQSVGLNTSGLYRQRLSSLEEHICNLKQNHALEDLPER
GIFDPNSTAFGRLTLPVAAPGMKVDNANSLDLAEHLYMHSNNQLDPFSSGNHSLNQQVLS
NVYASHPGAMESFHARKNGQLENSWTAKEIPQLNLEAELQRRESEVDSSAWASAGGVNEN
SKKALMDLLYQKLGIQSMQSSEIDRQNSTSSSRGRETFWPVSGPQTSNFPFNHFPNQEVH
VNNLFPEGHQNSNSSALLQGHLFGVASSASANHMVNCERLPLKANSGSFAEEQSFLLGIE
DPSRSCYADASLMGKSAVDKEIAELEGKDKENGMKGMSTRNGSVSGSEDNVLEQVETTLD
CGDLPSGIHSRHSSLGIDGSGRLYGYEIGVDKSAGEDVSNDRLPSMLPNGLDKVPQKCPP
VPQVSSSQDVFSDQSSLSFVKQNNSASLATSDEGKQGTMANLGTMRSVETQASSKKDLRF
RRTSSCNDAAVSEASFIEILKKPVLRGIEAANSTSLEPSDGATQAGRSGKKKGKKGRQID
PALLGFKVTSNRIMMGEIQRLDD
NT seq
5112 nt
NT seq
+upstream
nt +downstream
nt
atggctgacggaaaattagatctacctgatgatctcctctcctccaaaaccagcttcgac
cactcctctctcaaaggtgaagcgtgggatgggaacttggaggacaaaggacacgtgggg
ttacttgagggcaccaaagatcaagcaatttcagagagcaatatacctttgtctccacag
tggctttactctaaaccatctgattctaaggtgttagctactggaacatctggggatata
agagccacaaattcgttgtcccatagaacctctggtgattccaatctgaaagatagttgg
cgtctggatgggtctcaagacaagaaagaccggaggaagactgcagttgatcttgaaagc
agtcgccgttggcgtgaagaggagagagaaacaagcttacttggccgaagggatcgcaga
aaagaagaccgtcgggcagatatttcatcgatgagggatgtttctgaaaacaagcttact
tcttcagagagatggaatgatattaatagtcgtagttcaggacatgaatctcgaagagac
aacaagtggtcttcaagatggggtcccgaagacaaagaaaaggattctcgaactgagaag
aggacagaagctgagaaggaagaagcccttactgacaaacaagcttttgtaagtggggga
cgcatagcttctgaccgtgagaatgattctcatgataagtggagaccacgacatcgtttg
gaaattcatgcaggtggggctgcttctcatcacagtgctccaggttttggtttagagagg
ggacgagtggagggatcaactgtgcggtttgcagcaggacgaggtagatcaaatgctaat
gtaagcctacaaattgggaggccaaaatctgcttctgtcattggatctcgtcctctggac
aaaaacaaatcatttaacacatattgctaccctagaggaaaactgcttgatatttaccgc
aagcaaaagactgctccaaattttctcactgtacctgatgagatggatcatttatcacca
ctaactcagaaagaaactgttgagcctgtagcttttgttcctcctgatgcagaggaagag
gctctccttggagatatatggaagggaaaaactacaagcagtggagtgtcgtacaacaca
gctagagacacaagtggagggaaacaaagttctacacttaacatggaggatagtgttgaa
tcaggtgagaatgctgctgtaaacaatatttatcaagggaattatgctgggacatattat
gccttagattcacagatgattgtgaccgaggaaataaatagtacaaaagaaggtgggcag
agacgtgttttaccatctgacacaggtgtgacccatgctttgatatcagatagggaaatt
gatggctccataaatgatgctgatgaaataaaatctattgataaaggacaagtctctgat
ttgaaaatgcaaaagctacctaggttggaggataaggaatcatccattcattttggagag
ggtggcgagcttcctgaagactcaggttctctatttgatttttcatcactacaggctacc
ctaagccataaccagatagatattaagggaaattatgaggcacattcactggaaagtgtt
atccctcctgaggatttgattttgtgctatcttgatcctcaaggggtaattcagggacca
tatctgggaattgacataatttcatggtttgagcaaggttattttggtacagacttgcct
gttcgattggcagatgctcaggatggatctcctttccaagaacttggcgatgtcatgccg
cacctaagcatgaattctggttctgcatccagtggtagtgcagttatgagaatgcaatta
cctgattcttttgaaggtagcttgggtgagaccatatctacttctgcttctgctcttgaa
tttaaggggtctgacattggatgtgatcataagcagtctttgtctgctgttgagacttct
ggaactgattttcagttaagacgacttactcaaagttatccttctgagtatcagtcttct
gaagatcaaagcctccatgaatttgttgctgctcaagaagaggaaattatttttcatgga
aggcccacaagtgcgggggttgatccttctaaaatttctggtgaagttcaaggttctttt
ggcaatcctgcaagccatttgtccattacagatgagttttcaaaaaccaatataccttct
catcgagatgacgagctgcatccctttggtttgttgatgtctgagttgaggagcccatct
ggtttgaagtgttctcaatcatctaatatagcttccagcatcggtgatagggggcagttt
ttagatcctttgcttgatacagagacaaactttagtgatcacagcgttgttcgtagagtc
cctgaacagacttcttttcctgaggcttggcctgatgattatagaagaaatgctttgtct
aaccctaacattcgtctaggaactactggtggttggccctcatctcacaaggagcacgaa
gacaatagttttggccttttacgtcagctaatatcacaaaagctgcccaatgaaccactt
caagaggaaaatcatttctctcatccctttccatattcagctggatttgatgtggagcat
gtccagggtttcgatcttatgctgagcaaaaatctcaaccgccagagatcaatccatcat
tcagatcctcatatggaacaccttttggaacttcagtttcaacagcagcggcagttggaa
cttcagcgacagcagcagcagctggaacttcagaggcagcagcagctggaacttcagcgg
caacagcagcaactggaactacagcgacagcagcagcagctagagttacagcggcagcag
cagcagctagagttacagcggcagcagcagttggaactacagctacagcagcagcagcag
cagcagcagcagcagttggaacttcagcggcagcagcagcttcgtcaccaccaaattaaa
ttgttacaggagcagcagcaacatctacagctgccacattctcaagctcagcaattgctt
cttgatcaattgctgcagcatcagatccctgatcctggttatggtcagcaaatatttgat
gctgctagagacaacataatcgatcaggttcagttacgaaggcatctccttgctgaattg
caacagaattctcatgcttcaaggcacctggattcatcgctggagcagatcatccaagcg
aagattaaccagggtgcactccaagggcagcatgctgagtttttggatttcatgtcacag
gcaaagtatggcaatatgcttccttcagagcatcagcttcgtcttaaacaagaacacttg
caagcgcagcaattatctatggcacttaggcaacaattaggaatggaggggaatagaaga
cttgccggttcattgtctgtagatgacgttggtcagtttgttgggaatcctggcagtcat
catcaggctcaatctgtagggttgaatacttcaggtctttaccggcagaggctatcatct
cttgaagagcatatctgcaatcttaagcagaatcatgctttggaggacctaccagagcga
gggatttttgaccccaactctacagcatttggcaggttgactcttcctgtagctgctcct
ggaatgaaagtagacaatgcaaattctctagatctagcagaacatctttatatgcactcc
aacaaccaactggatccattttcttcaggtaaccactctcttaaccagcaagttttaagc
aatgtatacgcttctcatcctggtgcaatggagagcttccatgcaaggaaaaatgggcag
ctagaaaatagttggactgcaaaagagataccacaattaaatcttgaagcagaactgcaa
agaagggagtctgaagttgattcaagtgcttgggcatcagctggaggggttaatgaaaac
tctaagaaggctttaatggaccttctttaccaaaaacttggtattcaatctatgcaatca
tcagaaatcgatcgtcagaattctacttcatcttccagagggcgggaaaccttttggcct
gtttctgggccacaaacttccaattttccttttaatcattttccaaatcaggaagttcat
gtgaacaacttgtttccggaaggccatcaaaattctaattcaagtgccttgttgcaaggt
catttgtttggagttgcttcaagtgcatctgccaaccacatggttaactgtgaaagattg
cctcttaaagccaattctggctcatttgcagaagagcagtcattcttgttgggcattgaa
gatccttctcgtagttgctatgcagatgctagcttgatgggaaaatcagctgtggataaa
gaaatagcagaactggaaggaaaagacaaagaaaatggaatgaaaggcatgagtacaagg
aatggttctgtgtcagggtctgaggacaatgtattagagcaagtagagacaaccttggac
tgtggtgacctaccaagtggcatccatagccggcatagttctcttggaatcgatggaagc
ggcaggttgtatgggtatgaaattggagtagataagtcggctggagaagatgtttctaat
gataggttaccttcaatgctgccaaatgggcttgacaaagttccacagaaatgcccaccc
gtgccacaggtttcttcatcccaggatgtcttttctgatcaaagctcactgtcatttgtc
aagcagaataattctgcaagccttgcaacttctgatgaaggaaaacaggggacgatggca
aatctaggaacgatgaggagtgtagaaactcaggcatctagcaagaaagacctccgtttt
aggaggacctcatcttgcaatgatgctgcagtgtctgaagcatcattcattgagattcta
aagaagccggttcttcgtgggattgaggcagctaacagcacttctttggaaccatctgat
ggtgcaacacaagctggacgaagtggcaagaagaaagggaaaaagggaagacagattgat
cctgctctactgggtttcaaagtcaccagcaaccgtataatgatgggtgagatccaacgc
cttgatgattga
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integrated database retrieval system
