Gossypium hirsutum (upland cotton): 107889033
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Entry
107889033 CDS
T04793
Name
(RefSeq) ubiquitin receptor RAD23b
KO
K10839
UV excision repair protein RAD23
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03420
Nucleotide excision repair
ghi04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
107889033
09124 Replication and repair
03420 Nucleotide excision repair
107889033
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03051 Proteasome [BR:
ghi03051
]
107889033
03400 DNA repair and recombination proteins [BR:
ghi03400
]
107889033
Proteasome [BR:
ghi03051
]
Eukaryotic proteasome
Proteasome interacting proteins (PIPs)
UBL-UBA shuttle proteins
107889033
DNA repair and recombination proteins [BR:
ghi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XPC-HR23B-CETN2 complex
107889033
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
UBA
XPC-binding
ubiquitin
UBA_7
Rad60-SLD
CUE
TECR_N
UBA_3
Rad60-SLD_2
Ubiquitin_2
Dsc3_N
Ubiquitin_4
Motif
Other DBs
NCBI-GeneID:
107889033
NCBI-ProteinID:
XP_016668816
UniProt:
A0A1U8HS50
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Position
A09:61029658..61034800
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AA seq
373 aa
AA seq
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MKLTVKTLKGSHFEIRVQPNDTVMAVKKNIEDIQGKDNYPCGQQLLIHNGKVLKDETTLA
DNKVSEDGFLVVMLSKSKSLGSAGTSSAQPASSVPSTTAPVSNPTPAPEVPAQAPDSKSG
TSASDAATANPNTDTYSQAASNLVAGSNLEQTIQQLMDMGGGSWDKETVTRALRAAYNNP
ERAVDYLYSGIPELAEVAVPVPHFPSSQTTESGAAPVAPVSGAPNSSPLNMFPQETLSGA
AAGGLGSLDFLRNNQQFQALRSMVQSNPQILQPMLLELGKQNPQLLRLIQEHHAEFLQLI
NEPLQGSEGDIFDQAEQEMPHAINVTPAEQEAIERLEAMGFDRALVIEAFLACDRNEELA
ANYLLENSGDFED
NT seq
1122 nt
NT seq
+upstream
nt +downstream
nt
atgaagctcaccgtcaaaactctaaagggcagccacttcgaaattagggttcagcccaac
gacactgttatggcggtgaagaaaaacatagaggatatacaagggaaagacaattaccca
tgtggacaacagcttttgattcataatgggaaggttttgaaagatgaaactacgttagct
gataacaaagtctctgaagatggttttcttgttgtcatgctcagcaagagcaaatctttg
ggttcggctgggacctcgtctgctcagcctgcttcatcagttccgtctacaactgcacct
gtttctaatcctacccctgccccagaagttcctgcacaagcaccggactcaaagagcggt
acatctgcttcagatgctgcaacagctaatccaaatactgatacctatagtcaagccgct
tcgaatttagttgctggaagtaatcttgagcagactatccaacaattgatggatatgggt
ggtggcagctgggacaaagaaacagtaacacgtgcacttcgagctgcttataacaacccc
gagcgagcagtggattatctatattctgggattcctgaattggcagaagtggctgttcca
gtgcctcattttccttcaagtcaaaccactgaatccggtgctgccccagttgctcctgtt
tcaggggctcctaattcatcacctttgaacatgtttcctcaggaaacactctccggtgcc
gctgctggtggacttggatccctggatttcctccgaaacaatcaacagttccaagcattg
cgttcaatggtgcaatcaaacccacaaattttacagcccatgcttctggagctgggaaag
caaaacccccagcttttaagattaattcaagaacatcatgccgagtttcttcagctaata
aatgaacctctccaaggttctgaaggggatatatttgatcaagctgaacaagaaatgcct
catgcaatcaatgtgaccccggcagaacaggaggctattgaacggctcgaagcaatggga
ttcgatagagcactcgtcatcgaagcatttttggcttgtgatcggaatgaagaattggca
gcaaactacttactggaaaattctggggattttgaggattga
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