Gossypium hirsutum (upland cotton): 107889241
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Entry
107889241 CDS
T04793
Name
(RefSeq) ERAD-associated E3 ubiquitin-protein ligase HRD1B
KO
K10601
E3 ubiquitin-protein ligase synoviolin [EC:
2.3.2.27
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi04120
Ubiquitin mediated proteolysis
ghi04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
107889241
04120 Ubiquitin mediated proteolysis
107889241
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ghi04121
]
107889241
Enzymes [BR:
ghi01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
107889241
Ubiquitin system [BR:
ghi04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
107889241
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-rbx1
zf-C3HC4
zf-RING_UBOX
zf-C3HC4_2
FlxA
zf-C3HC4_3
zf-ANAPC11
CENP-Q
zf-RING_16
GTP-bdg_M
zf-RING_11
zf-RING_5
Motif
Other DBs
NCBI-GeneID:
107889241
NCBI-ProteinID:
XP_040932407
UniProt:
A0A1U8HSS8
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Position
A09:67244977..67251395
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AA seq
542 aa
AA seq
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MMRLRTYAGLSLVTTLAVIYHAFNSRGQFYPAMVYLSTSKISLVLLLNMGLVVMCILWQL
TKRLFLGSLREAEVERLNEQSWREVMEILFAITIFRQEFSVPFLAMVTALLLIKALHWLA
QKRVEYIETTPSVPKLAHVRIVSFLGFLLLLDSLFLYSSIKFLIQTRQASVSIFFAFEYM
ILATTTMSTFVKYVFYVSDMLMEGQWEKKAVYTFYLELIRDLLHLSMYLCFFLVIFMNYG
VPLHLIRELYETFRNFKIRVADYLRYRKITSNMNDRFPDATPEELSASDATCIICREEMT
LAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPPENGTSSSGGQHGTWSDAPRQGSST
SSATQGPGVEMATDDLTPHQARLQAAAAAASIYEKSYVYPSANTLVWSPGNAVLPGSYAP
LADTMKVEHSGESPSIGHQQFAIPGGLPNLPFPQFPNCVFVPFQLPGANGNSGGGGSGSN
QNLSDSQLEAQKKTIEQQIEVLQRQLQLLQMHKSKTEESSDIGLTTSSDSKGKGVASSSS
EE
NT seq
1629 nt
NT seq
+upstream
nt +downstream
nt
atgatgaggctgcgaacatatgctggtctcagtttagtcacgacactagcagttatatat
catgcattcaacagcagaggccagttttatcctgctatggtttatttatcaacctctaag
atcagcttagtgttgcttctcaacatgggccttgtagttatgtgtatcttatggcaatta
actaaacggttattccttgggtctcttcgagaagctgaggttgagcggttgaatgagcaa
tcatggagagaggtcatggagatcctctttgcaatcactatctttcggcaggaattctct
gttccatttcttgcaatggttactgctctattgttaatcaaggctttgcattggttggcg
cagaagagggttgagtacattgaaacaaccccttccgttccgaagttagcgcatgttcgg
atagtttcatttctgggttttcttcttctgcttgattctctgtttttatacagttctatc
aagtttctgatccaaacacgacaagcttcagtttccatcttctttgcatttgagtacatg
atactggcaacaacaacaatgtcaacttttgtaaaatatgttttctatgtgagtgacatg
cttatggaagggcaatgggagaaaaaagctgtatataccttctacttggagctcatccga
gacttgcttcacttgtctatgtacttgtgcttctttcttgtgattttcatgaattatggt
gtacctctgcacttaatacgggagctttatgagacatttaggaattttaaaattcgtgtt
gctgattacttgcggtatagaaagatcacctcaaatatgaatgatagattcccggatgca
acccctgaagaactctctgcaagtgatgcaacatgtattatatgtcgcgaagagatgacc
ttagcaaagaagttaatttgtggacatctttttcacgtccactgccttcgatcatggctg
gagaggcagcatacctgtccaacctgcagagcacttgttgtaccacctgaaaacggaaca
agttcatctggagggcaacatggaacttggtcagatgctcctcgacaagggtccagcacg
agttcagctacacaaggtcctggtgttgagatggccactgatgatttgacccctcatcag
gcgaggctgcaggctgctgctgctgcagcatcaatatatgagaaatcctacgtctatcct
tctgcaaacacattagtttggtctccaggaaacgctgtacttccagggtcttatgcgcca
ttggctgacaccatgaaggtggaacatagtggggaaagcccatccattggacatcaacag
tttgccattcctggtggactgccaaacttgccctttccacaattcccgaactgtgttttt
gttcctttccagttacctggtgccaatggaaactcaggaggaggaggatcagggagtaat
cagaatctttcagattcccagttggaggctcagaagaagactattgaacagcagattgag
gtactgcaacgtcaacttcagctcttgcagatgcacaagtcaaaaactgaggaaagctca
gacattggtctcacaacctcatcagatagtaaaggaaagggcgttgcatcttcttcttct
gaagagtaa
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