Gossypium hirsutum (upland cotton): 107889250
Help
Entry
107889250 CDS
T04793
Name
(RefSeq) general transcription factor IIH subunit 2
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03022
Basal transcription factors
ghi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
107889250
09124 Replication and repair
03420 Nucleotide excision repair
107889250
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ghi03021
]
107889250
03400 DNA repair and recombination proteins [BR:
ghi03400
]
107889250
Transcription machinery [BR:
ghi03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
107889250
DNA repair and recombination proteins [BR:
ghi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
107889250
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ssl1
C1_4
VWA_2
VWA
Motif
Other DBs
NCBI-GeneID:
107889250
NCBI-ProteinID:
XP_016669100
UniProt:
A0A1U8I0B6
LinkDB
All DBs
Position
A09:complement(67628879..67632586)
Genome browser
AA seq
413 aa
AA seq
DB search
MNNGAGRRINGGAEEDDDEDDVNGDLDAWERTYTDERSWESLQEDESGMLRPIDNQALYH
SQYRRRLRSLSSTAARIQKGLIRYLYIVIDLSRAASEMDFRPSRIAVIAKHVETFIREFF
YQNPLSQVGIVTIKDGVAHCLTDIGGSPESHINALMKKLECSGDSSLQNALDLVDGYLNQ
IPSYGHREVLILYSALSTCDPGDIMDTIQKCRKSKIRCSVIGLAAEMFICKHLCQETGGT
YSVALDESHFKELILEHAPPPPAIAEFAVANLIKMGFPQRAAEGSISICSCHKEAKVGAG
YTCPRCKARACELPTECCVCGLTLVSSPHLARSYHHLFPIAPFDEVTSSHLNNPNCKLQR
NCFGCQQSLLDPGNKPGPAVVCPKCKRYFCLDCDIYIHESLHNCPGCDSLRHS
NT seq
1242 nt
NT seq
+upstream
nt +downstream
nt
atgaataatggagcgggaagacggatcaatggtggagcggaagaggatgatgatgaagat
gacgtgaatggggatcttgatgcgtgggagagaacttacactgatgagaggtcatgggaa
tctttgcaagaggacgaatcagggatgcttcgccccattgacaaccaggccctttatcat
tcacagtatcgccggcgccttcgttccctttcgtccactgctgctcggatacaaaagggt
ctcattcgttatctatacattgttatcgatctttctcgggcagcttcagagatggatttc
cgaccaagtcgaattgctgtcattgcaaaacatgttgagactttcatccgggagttcttt
taccagaatcctcttagtcaagttggtattgtgactataaaagatggggttgctcactgc
ttaacagatattggtggtagtcccgagtctcatatcaacgctttgatgaagaagttggaa
tgttcaggtgattcctccttacagaatgcattggatcttgtagatgggtatctgaatcaa
attccatcatatggtcatcgtgaagttctcatattatattctgctctcagtacttgtgat
cctggagatataatggacaccattcagaaatgtaggaaatctaaaataagatgttcagtt
attggcctcgctgcagaaatgtttatatgcaaacatctttgccaggaaacaggaggaacg
tactctgttgcactggatgagtcccactttaaagagctaatattggaacatgcaccacca
ccacctgccatagcggaatttgcagttgctaatttgatcaagatgggattcccacaaaga
gcagctgagggttctatatcgatttgttcgtgtcataaagaagctaaggtaggtgcaggt
tacacttgtccaagatgcaaagcccgtgcatgtgagcttcctactgaatgctgtgtctgc
gggttgacactcgtgtcttcaccccatttggctagatcatatcatcatctctttccaata
gcaccatttgacgaggtgacctcatctcatttaaacaatccaaactgcaaactgcaaaga
aattgtttcgggtgccaacaaagcctccttgatccaggaaacaaacccgggcctgccgtt
gtgtgcccgaagtgcaaacggtacttctgcctggattgtgacatttacattcatgagagt
ttgcacaattgtcccggttgtgacagcttgaggcattcctag
DBGET
integrated database retrieval system
