Gossypium hirsutum (upland cotton): 107889292
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Entry
107889292 CDS
T04793
Name
(RefSeq) protein SMG7
KO
K14409
protein SMG7
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
107889292
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107889292
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
107889292
mRNA cycle factors
Common to processing body (P body) and stress granule
107889292
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
Motif
Other DBs
NCBI-GeneID:
107889292
NCBI-ProteinID:
XP_016669148
UniProt:
A0A1U8HYX2
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All DBs
Position
A09:complement(68229321..68235547)
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AA seq
979 aa
AA seq
DB search
MMIVQMDKMSTAPSSREGAQCLYKKNIELENNRRKSAQARVPSDPNTWQQMRENYEAIIL
EDHAFSEQNNIEYALWQLHYKRIEELRAHYSAALTSARSTTSQGVKVPPQSDRLTKIRLQ
FKTFLSEATGFYHELILKIRAKYGLPFGYFSDDSESLIVMDKDGKKSAEIKMGLVSCHRC
LIYLGDLARYKGLYGDGDSKTREYAAASSYYLQAVSVWPLSGNPHHQLAILASYSGDEVV
AVYRYFRSLALDNPFSTARDNLIVAFEKNRHSYSQLTGDAKTSLVKEPAVSLSGKGRRKA
EAKPTSKESNMESRPPKEKESGAQDNLKSFCIRFVRLNGILFTHTSLETFADVLKLVSHD
LCELLSSGPEEKLSFGTGATENALFLVRLVSVLIFTVHNLKRESEAQTYAEIVQRAALLQ
NALTAIFELMGYLVERCLQLKDVSSSYTLPAILVLVEWLACCPDVATADGDVDEKQSITR
SLFWKHCISFLNKILTIGPMCIDDDEDETFFNMSRYEEGETENLLALWEDFELRGFLPLV
TAHNILDFSRKRSFISDGDKEKKARVKRILAAGRALASVIRIDQKTVCFDSKAKKFLVGV
EPCEGVTFGSSTLLAANGVEHETPSEKINIGNMLPIAPGIVAEDYDDEVIVFQPSVSEKR
IEVINSNRPPPETLKLDLSSCGGDRNFYGSTVSASLDSLHQHNKSDASPPLPASVGSIHS
QQLQPVQMHASRWSVKEATSLSNSLRALTMLENGHLRKHEMQDNLGLRHPAAYSFAIQQP
INASAGGMYYSQTKVPETVIPSGIDTIVSSRVAADALASKTTSASQVGMHNNPVNGAVRH
LGPPPGFGPVPPKPPSEETPVMDDYSWLDGYRLASSLKGSGLDSSLNYASHADSLYVNNS
SSGLTGTISFPFPGKQVSPVQFQMEKQNSWQDYNTLDHKKFQHEQKLQQHQFMNGNQQQF
TSLPEQFQGQSMWTGRYFV
NT seq
2940 nt
NT seq
+upstream
nt +downstream
nt
atgatgatagtgcagatggataaaatgtcgacagctccttcatccagggagggtgcacag
tgtctttataagaagaatatagagctggaaaataatcgtaggaaatctgctcaggcacga
gtaccctcagatccaaatacctggcagcagatgcgtgagaactatgaggcaataattctc
gaggaccatgcattttctgagcagaacaatattgaatatgctttgtggcaattacattac
aaacggattgaggaactaagagcacattatagtgctgccctaacttctgccaggtcaacc
acatctcagggcgtgaaagttcccccacagtctgacaggcttacaaaaataagattgcag
tttaagactttcctttcagaggcaacaggattttatcatgaattgattttgaaaatcaga
gcaaagtatggacttccatttgggtatttctctgatgattcagaaagcctaattgttatg
gacaaagatgggaagaaatctgctgagataaaaatgggtttggtgtcttgtcaccgttgt
ttgatatacttgggagacctagcacggtacaaaggattatatggagatggagactctaaa
acacgtgagtatgcagctgcttcaagttactacttgcaagctgtgtcagtttggccctta
agtgggaatccacatcatcagctagccatattggcatcctactcgggagacgaggtggtg
gctgtttatcgatattttcggagtctggcattggataaccccttttcaactgctagggat
aacttgattgtggcttttgagaagaaccgtcatagttactcacagcttactggagatgct
aaaacttccttggtcaaggagcctgcagtgtcgttatcgggaaaaggtagaaggaaagcg
gaagcaaaacctacatcgaaagaatccaacatggaatcaaggcctcctaaggagaaagaa
tctggtgcccaggataatttgaagtccttctgcattcgatttgtgcgtctaaatggtatt
ctttttacacacacaagtctggagacttttgcagatgttcttaaattggttagccatgat
ttatgcgaacttctgtcttcgggaccagaagagaaattgagttttggcacaggtgctact
gagaatgcacttttccttgttaggttggtttcagttctcatatttactgttcacaatctg
aagagggagagtgaagctcaaacatatgctgaaattgtacagcgtgctgcgttgcttcag
aatgcattgacagccatttttgagttgatgggatatctggtagagagatgtttgcagctc
aaggatgtttcttctagctacaccttaccagctattctggttttggtagagtggctggct
tgctgcccggatgttgcaacagctgacggtgatgttgatgagaaacagtcaattactaga
tcactcttctggaaacattgcatatcatttctaaataagatcctgacaattgggccaatg
tgcatcgacgatgatgaagatgagacctttttcaatatgagcaggtatgaagaaggagaa
actgaaaaccttcttgcattgtgggaggactttgagttgcgagggttcttgcctcttgtt
acagcacataacattttggacttctcaaggaaacgttcctttataagcgatggtgataag
gaaaagaaagcccgtgtcaagagaattttagctgctgggagggctcttgctagtgtcatt
aggattgatcagaaaactgtttgttttgattcaaaagccaagaaatttcttgttggtgtt
gagccttgtgaaggtgtcacatttgggtcttctaccctgctggcagcaaatggcgtggaa
catgaaaccccctctgagaagattaatattggaaatatgctgccaatcgcacctggaatt
gttgcggaagattatgatgatgaagtgattgttttccagccttctgtgagtgaaaagaga
attgaggtgatcaattctaacaggcctcctcctgagactttgaagcttgatctaagtagt
tgtggaggtgatcgcaatttctatggcagtaccgtgtctgcttctcttgatagtcttcac
cagcataataaatctgatgctagtcctccactgcctgcatctgttggtagcattcactct
cagcagttacagcctgttcagatgcatgcatctaggtggtcagtgaaggaagctacttca
ctgtctaatagtttgagggctttgacaatgttggaaaatgggcatttaagaaaacatgag
atgcaagataatctaggccttcgtcatcctgctgcttactcttttgctatccaacaacct
atcaatgctagtgctggcggtatgtactacagtcagacaaaagtgccagaaactgtgatc
ccatctggaattgatacaattgtgtcgtctagagttgctgctgatgctttggcttctaaa
actacctcagcttcacaagttgggatgcataataatccagttaatggtgctgttaggcat
cttggccccccaccaggttttggccctgttcctccaaagccaccaagtgaagaaacccct
gtgatggatgattatagttggttggatggatatcggttggcatcatcattgaaaggctct
gggcttgatagttctctcaattatgcgtctcatgcagattccctgtatgtcaataatagc
agcagtggcttgactggaacaataagctttcctttccctggaaaacaggtctcaccggtg
caatttcaaatggaaaagcagaatagctggcaggattacaatacccttgatcataaaaaa
tttcaacatgaacagaagctgcagcaacatcaattcatgaatggaaaccagcagcagttt
acctcactgcctgagcagtttcaaggacaatcaatgtggacaggacgttattttgtgtga
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