Gossypium hirsutum (upland cotton): 107889299
Help
Entry
107889299 CDS
T04793
Name
(RefSeq) protein CHROMATIN REMODELING 5 isoform X3
KO
K11367
chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
ghi
Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ghi03021
]
107889299
03036 Chromosome and associated proteins [BR:
ghi03036
]
107889299
Transcription machinery [BR:
ghi03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
107889299
Chromosome and associated proteins [BR:
ghi03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
107889299
SLIK complex
107889299
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_Hrp3
Helicase_C
Chromo
CHD1-like_C
HDA2-3
ResIII
DEAD
SWI2_SNF2
Chromo_MIT1
KH_PARP14_5
Motif
Other DBs
NCBI-GeneID:
107889299
NCBI-ProteinID:
XP_016669155
UniProt:
A0A1U8HT01
LinkDB
All DBs
Position
A09:68362467..68383316
Genome browser
AA seq
1751 aa
AA seq
DB search
MMAFFRNYSNDTDAHDVLEEKSQGQSIGRIRSSVGSDDVGGSGTFSEREFDINAHYQSDR
EPDGSVRLHNEVAAASGAGVSNSNFQPPGRRVAPGKWGSTFWKDCQPMDHQGGSDSGQDS
KSDHRNLEASDYNSSDDRDDRLDLEDDEAQKGKAQRGHSDVPADEMLSDEYYEQDGEEQS
DTMHYTGLSNSVGLNTRPKSKPASLSSTMSRSSRALNNFNYDDEESNHDVDYEEEEEEDE
DDPDDADFEPDYDAASGHAGNQFVKQDKDWDGEDSEEEDNSDGDVDISDEEDSYYRKKPK
GVQRVKVGLSVKPTKEHKSTNRQRRGKSSFDEDECSAEDSDSESVHDFKSIARSGGNHRI
SSARSNTFISMGRNSEVRTSSRSVRKVSYVESEESEEIEEVKKKKTLKDEAEEEDGDSIE
KVLWHQPKGMADDAIRNSRSTEPVLLSHLFDSEPDWNEMEFLIKWKGQSHLHCQWKSFFE
LQNLSGFKKVLNYTKKVMDDAKYRKALSREEIEVNDVSKEMDLDLIKQNSQVERVIVDRI
SKDASGNVMSEYLVKWQGLSYAEATWEKDIDITFAQDAIDEYKARDAAMAVQGKIVDHQR
KKGKASLRKLDEQPEWLRGGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSM
LGFLQNAQQIPGPFLVVVPLSTLSNWAKEFKKWLSDMNVIVYVGTRASREVCQQYEFYND
KKIGRPIKFNTLLTTFEVVLKDKAVLSKIKWNYLMVDEAHRLKNSEAQLYTTLSEFSTKN
KLLITGTPLQNSVEELWALLHFLDPHKFESKDDFVQNYKNLSTFDENELANLHMELRPHI
LRRVIKDVEKSLPPKIERILRVEMSPLQKQYYRWILERNFHDLNKGVRGNQVSLLNIVVE
LKKCCNHPFLFESADHGYGGDTSMNDISKLERIILSSGKLVILDKLLTRLHETKHRVLVF
SQMVRMLDILAEYLLLRGFQFQRLDGSTKAELRQQAMDHFNAPGSDDFCFLLSTRAGGLG
INLATADTVIIFDSDWNPQNDLQAMSRAHRIGQREVVNIYRFVTSKSVEEDILERAKKKM
VLDHLVIQKLNAEGRLERKETKKGSHFDKNELSAILRFGAEELVKEDRNDEESKKRLLSM
DIDEILERAEKVEEKVGEEEGNELLSAFKVANFCNAEDDGTFWSRWIKPDAIAQAKDALA
PRAARNTKSYAETSQPERSNKRKKKGSDSQELQERVQKRRKAEYSAPLAPMIEGATAQVR
GWSYGNLPKRDALRFSRAVMKFGNENQITLIAEEVGGAVAAAPIDAQIELFQALVEGCRE
AVEVGNAEPKGPLLDFFGVPVKANDLFNRVQELQLLAKRISRYEDPIRQFRVLMYLKPSN
WSKGCGWNQIDDARLLLGIHYHGFGNWERIRLDERLGLTKKIAPAELQHHETFLPRAPNL
KERANALLEMEVAAIGGGKNAGTKAGRKASKKEKQNTLNVSISRGRDKKGKPGSPKVNFK
MSRDRHKRPQKVELVKEEGEMSDNEEVYVHFKEVKWMEWCEDVMIDEIKTLRRLQRLQTT
SADLPKDKVLSKIRNYLQLLGRKIDEIVLEHEDELYRQDRMTMRLWNYVSTFSNLSGERL
HQIYSKLKQEREEEGGDGPSHINGAIPGHVDRDGDPNYPPLSHSVEKQRGYKNAVAYQTS
QPIHKGIDAAKFEAWKRRRRAEGDTHPQLQPPAQRPTNNGIQLVDPNSLGILGAGPSDKR
LVSNERPYRMH
NT seq
5256 nt
NT seq
+upstream
nt +downstream
nt
atgatggcattttttcggaactattcaaatgacacagacgcacacgatgtcttggaagag
aaaagccagggacaaagcattggtaggattcgaagttcagtaggaagtgatgatgtgggt
gggagtgggactttttccgaaagagaatttgatattaatgcacactatcaaagtgacagg
gagccagacggttctgttaggctccataatgaagtggctgctgctagcggtgctggtgtt
tcaaattcaaattttcagccaccgggaagaagagtagctcctggaaaatggggttcgact
ttttggaaggactgtcagcctatggaccaccagggtggatcggactctgggcaggattcg
aaatctgaccacaggaatttggaagcttcggattataattcatcagatgacagggatgat
aggttggatttggaagatgatgaggcgcagaaaggcaaggctcaaaggggccattctgat
gttcctgcagatgagatgttatctgatgaatactatgaacaggatggggaagagcaaagt
gataccatgcattatacaggccttagcaattctgttgggttaaatactaggccaaagtct
aagcctgcttctcttagtagcactatgtccaggagttcaagagctttaaataacttcaac
tatgatgatgaggaaagcaatcatgatgttgattatgaagaggaggaggaagaagatgaa
gatgaccctgatgatgcagattttgagcctgactatgatgctgcaagtggtcatgctggg
aatcagttcgttaaacaggacaaagactgggatggtgaagattctgaggaagaagacaat
agtgatggtgatgtagatatttcagatgaagaggattcttattatagaaaaaaacctaaa
ggagtgcaacgtgttaaagttggacttagtgtcaaacccactaaagaacataaatccacc
aatcgacaaagaagagggaaatcatcatttgatgaggatgaatgctcagctgaggattct
gacagtgaaagcgtccatgatttcaagagcatcgctagaagtggtggaaatcaccgtata
agtagtgctcgttctaatacattcataagcatgggaagaaacagtgaggttcgtacttct
agtaggtctgtacggaaagtatcatacgttgagagtgaagaaagtgaagaaattgaggaa
gtcaagaagaagaagactctaaaggatgaagctgaagaggaagatggtgactcaattgaa
aaggtgttatggcatcaaccaaagggcatggctgatgatgctattagaaacagtagatct
acagagcctgttctgctaagccacttgtttgattctgaaccagattggaatgagatggaa
ttcctgattaaatggaaggggcagtcacatcttcattgtcaatggaaatcgttttttgag
ctacaaaatcttagtggttttaagaaggttctaaattacacaaaaaaggtgatggacgat
gcgaaatacaggaaggcgctgtcacgcgaggagattgaggtaaacgatgtaagtaaggaa
atggacttggatctaatcaagcaaaatagtcaggtggagagagtaattgttgatcgaatc
agtaaggatgcctctgggaatgtgatgtcagagtatttggtcaagtggcagggattgtct
tatgcagaagcaacatgggaaaaggatatagatattacatttgcacaagatgctattgat
gagtataaggctcgtgatgctgcaatggctgtgcagggaaaaattgtagatcaccagcgt
aagaaaggcaaagcaagtttgcggaaacttgatgaacaaccagagtggttaaggggagga
aagcttcgtgattatcagctagagggtttgaattttcttgttaacagttggagaaatgat
actaatgtcatcttagctgatgaaatgggtcttggtaaaactgtccagtcagtatctatg
cttggtttcttacagaatgctcaacaaatccctggaccatttcttgtggttgttccatta
tcaaccttatcaaactgggctaaagaattcaagaagtggctttcagatatgaatgttatt
gtatatgttggtactcgtgcaagccgagaggtttgtcagcaatatgaattttacaatgac
aagaaaattggcagacctataaaatttaataccctgctaactacgttcgaggtagttctg
aaggataaggcagtactgtctaagataaagtggaactatttgatggttgatgaagctcat
aggttgaagaatagtgaggcacagttatacacaacgctttcagaatttagtactaagaac
aagttgctaattactggaactccattacagaacagcgttgaggagttatgggctctgctt
catttccttgatcctcacaagtttgaaagtaaggacgattttgttcaaaattacaagaac
cttagcacatttgatgaaaatgagcttgctaatcttcacatggaattgaggcctcacatt
cttcgaagagttatcaaggatgtagagaaatctttgcctccaaaaattgagcgtatcctt
agggttgagatgtccccgcttcagaaacagtactataggtggattttggaacgcaacttc
catgacttaaacaagggtgttcgtggaaatcaggtctcacttttaaatatagtggttgaa
ttgaagaaatgctgcaatcatccctttctgtttgaaagtgctgatcatggttatggcggg
gacactagcatgaatgatattagtaaattggaaagaattatattaagcagtgggaagcta
gtcatacttgacaagttgcttaccaggttgcatgaaacaaagcatagagttctagtcttt
tcccagatggttagaatgctggatatactagcggagtacttgttgctcagaggattccaa
tttcagaggcttgatggtagtacaaaggcagagttacgacagcaggctatggatcatttc
aatgcacctggaagtgatgatttctgcttccttctttctactcgggctggtggccttggt
ataaaccttgcaactgcggacactgttataatatttgattctgactggaatccgcagaat
gacttgcaggcaatgagtagagctcatagaattgggcaacgtgaagttgtcaacatttac
agatttgtgactagcaaaagtgttgaggaagatatcctggagcgagctaaaaaaaagatg
gtgcttgaccatttggtgatccaaaaattaaatgcagagggtagattggagagaaaagaa
acaaagaaagggagtcattttgacaagaatgagctatcagcaattttgagatttggggct
gaagagttggtcaaggaggacagaaatgatgaagaaagcaaaaaaaggctgttaagtatg
gatatagatgaaattcttgaaagggcagagaaggttgaggagaaagtgggtgaggaggaa
gggaatgaattgttgagtgcttttaaggttgctaatttctgtaatgctgaagatgatggt
actttctggagtcgttggataaaaccagatgctattgcacaagccaaagatgctctggct
cctcgtgctgcaaggaataccaagagttatgccgagacaagtcaacctgagaggagtaac
aaaagaaagaagaagggctctgattctcaggagcttcaggagagagtacaaaagcgccgt
aaagcagaatactccgctcccttggcaccaatgattgagggagcaactgctcaagtgaga
ggatggtcttatgggaatctgcctaaaagagatgctctgcgcttttctcgagcagttatg
aaatttgggaatgagaaccaaatcactttgatagcagaggaagttggtggtgctgttgca
gcagctccaattgatgcacagattgagcttttccaagctttggttgaaggatgcagagaa
gcagttgaagtaggaaatgcagaacctaagggaccattattggacttctttggcgtccct
gttaaggcgaatgatctgttcaatcgtgtccaagaacttcagttgttagcaaagcgaata
agtaggtatgaagatcctataagacagttccgtgtgttgatgtaccttaaaccctctaat
tggtccaaggggtgtggatggaatcagattgatgatgcgagactgcttctgggaatacac
taccatggatttggaaattgggaaaggataagattagatgaaaggcttggcctcacgaag
aagattgctcctgctgaacttcaacaccatgaaacctttctgccacgagccccaaatttg
aaggaacgtgctaatgcacttttggaaatggaagttgcagcaattggtggtggtaagaat
gctggtaccaaggctggtcgaaaggcttcaaagaaagaaaagcagaatactcttaatgta
tcaatatctcgtggaagagataagaaggggaaaccgggttctcctaaagtcaattttaaa
atgagtagggacaggcataagaggcctcagaaagttgaactagttaaagaagagggcgaa
atgtctgacaatgaggaggtatatgtgcactttaaagaagtgaagtggatggagtggtgt
gaagatgttatgattgatgaaataaaaacccttcgtcgtctccaaagattgcagactacc
agtgctgatcttccgaaggataaggtgctttcaaaaattcggaattatctgcagcttctt
ggaaggaaaatagatgaaattgtcttggaacatgaagatgagctctatagacaagatagg
atgactatgcgcttatggaactatgtctctacattctcgaatctttctggtgagaggctg
catcagatttattccaaacttaagcaggagcgggaagaagagggaggggatggaccctca
catatcaatggtgctatacctggtcatgttgatagagacggtgaccctaactacccccct
ttgtcacattctgttgagaagcaaagagggtacaagaatgcagtggcatatcaaacatca
caaccaattcacaaaggcattgatgctgcaaagtttgaagcttggaaacgacgacggaga
gcagaaggggatacccatccccaactccagcccccagctcaaagacctacgaacaatggt
atccaattggtagatccaaactccttggggattcttggggcaggaccatcagataaacgt
cttgttagtaatgagagaccgtatcggatgcattaa
DBGET
integrated database retrieval system
