Gossypium hirsutum (upland cotton): 107889355
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Entry
107889355 CDS
T04793
Name
(RefSeq) receptor homology region, transmembrane domain- and RING domain-containing protein 2
KO
K15692
E3 ubiquitin-protein ligase RNF13 [EC:
2.3.2.27
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ghi04121
]
107889355
Enzymes [BR:
ghi01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
107889355
Ubiquitin system [BR:
ghi04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
107889355
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
PA
zf-RING_11
zf-C3HC4
zf-C3HC4_2
zf-RING_UBOX
zf-rbx1
zf-RING_5
zf-ANAPC11
zf-C3HC4_3
AF_0924
zf-C3H2C3
zf-RING_4
Prok-RING_4
zf-RING-like
Motif
Other DBs
NCBI-GeneID:
107889355
NCBI-ProteinID:
XP_016669232
UniProt:
A0A1U8HT77
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All DBs
Position
A09:complement(69425555..69435046)
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AA seq
448 aa
AA seq
DB search
MKMNRVVVLLLLLWFLCFSSVFWMTSANVVLIGNNVTLSFDDIEANFAPAIKGSGECGVL
YLANPLDACSDLSIKVDELSNGSSPFALVIRGGCSFEEKVRRVQKAGFEAAIVYDNDDDG
VLVAMAGNAAGIKIHAVFVSKASGEILKKFAGSTDMELWLIPSFENSAWSIMAISFISLL
AMSAVLATCFFVRRHRIRRELPQSSRVREFHGMSRRLVKAMPSLIFTAVLEDNCTSITCA
ICLEDYTVGEKLRILPCRHKFHAFCVDSWLTTWRTFCPVCKRDARTSTGDPPASESTPLL
SSTLSTMSSSALSSVRSSLASSSAIQIAPALSRSPSIAHTLSLASNPYIQQSLRSYRQSP
MSFSRSSVDLRNASSQRSRASHLVSPASLNYPSISPLNARYISPYFPSPSNASPSIVSSS
GHLLHPLHYSESATSFSPFASAQSLPDC
NT seq
1347 nt
NT seq
+upstream
nt +downstream
nt
atgaagatgaatcgagttgtggttttattattgttattatggtttctctgtttctcgagt
gttttctggatgacgtctgccaatgtggttttgattggtaacaacgttaccctctctttc
gatgatattgaagctaattttgctccggcaattaaagggtcaggggaatgcggagtatta
tatttggcaaatcctcttgatgcctgttcagacttgagtattaaagttgatgaactttca
aatggttcgtccccatttgcattggttattcgaggagggtgtagttttgaagagaaagta
aggagagtgcaaaaggcaggatttgaagccgctattgtctatgacaatgatgatgatggt
gtcttggttgcaatggcagggaatgcagctggcattaagatacatgctgtctttgtttcc
aaagcttctggtgaaatactcaaaaagtttgctgggtctactgatatggaactgtggcta
atccctagctttgaaaactcagcatggtcgatcatggcgatctcctttatttctctactt
gccatgtcagcagtgctggcaacttgtttctttgtacgtagacatcgcattaggcgagaa
ctcccacagtcttctcgagttcgtgaattccatggaatgagccggcgtttagtaaaagca
atgcctagcttgatattcactgctgtcttggaagataattgtacttcaataacctgtgcg
atatgtcttgaagattatactgtgggtgagaagctcaggattcttccatgtcgccacaag
tttcatgctttttgtgttgattcctggcttacaacttggagaactttttgccctgtttgt
aagcgtgatgcaagaactagcacaggtgatccacctgcatcagaaagtacaccattgctt
tcatccaccctgagcaccatgtcctcctctgcattgtcatctgttcgatcttcattagca
tcatcatcagccatacaaattgccccagcattgtcacggtctccatcaattgctcatact
ctttctcttgccagcaatccatatattcagcaatcacttaggtcctatcgtcaatctcct
atgagcttcagccgaagctcggtagaccttaggaacgcatcttctcaaagatctcgtgct
tctcatctggtttcgccggcatcattgaattacccttctatatcgcctcttaatgcaaga
tacatctccccatatttcccaagcccaagcaacgcatcaccaagtatagtcagttcttcg
ggtcacctactgcatccgctgcattatagcgagtctgctactagtttttctccttttgca
tctgctcaatctcttccagactgttaa
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