Gossypium hirsutum (upland cotton): 107889398
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Entry
107889398 CDS
T04793
Name
(RefSeq) polygalacturonase-like
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi00040
Pentose and glucuronate interconversions
ghi01100
Metabolic pathways
Module
ghi_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
107889398
Enzymes [BR:
ghi01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
107889398
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Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
Beta_helix
Motif
Other DBs
NCBI-GeneID:
107889398
NCBI-ProteinID:
XP_040932517
UniProt:
A0A1U8HZB5
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Position
A09:complement(70756676..70759525)
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AA seq
460 aa
AA seq
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MDGQIRQVVVLYFITIFSLFSRYNSLEKDPPPPSYNYFEDLVSAGYDPQAYPSYFTTTID
DGHFKDLISQRTQVISQLQKLGVISAPSTKTVNVDDFGATGDATQDTQAFEKAWEEACSS
KGEVVLEVPQGKRYQLKPIRFSGPCKSNLTIQIYGSMEASDDMSDYKEDTRHWLIFDSIN
NLLIEGGGTGKINGNGKIWWQNSCKINKTLPCKDAPTALTFYNSKNLKVQNLNIQDAQQI
HVSFEKCNGVQASGLAVAAPESSPNTDGIHITRSQNIWITNSVIGTGDDCISIVSGSKNV
QAMDITCGPGHGISIGSLGSKSSKAYVSGVTVDGAKLSGTANGVRIKTWQGGLGSASNIL
FQNIEMNNVSNPIIIDQNYCDQDKPCKEQSSAVKVKDVVYKNINGTSASEVAIKFDCSKT
HPCQEILLQNVKLQEQGDRTAKAICNNVKLTEKGTVFPQC
NT seq
1383 nt
NT seq
+upstream
nt +downstream
nt
atggatggacaaattagacaagtagtcgtcctatatttcataaccattttctctttattc
tcacgttacaactctttggaaaaggacccccctcctccctcttataattactttgaagac
cttgtatccgctggatatgatccacaagcctacccttcatatttcaccaccaccattgat
gatgggcactttaaggatttgatctcacaaaggactcaagttattagccagctccagaag
ttaggtgtcatatcagcaccatcaactaaaacagttaatgtcgatgattttggagccacc
ggtgatgccactcaagacactcaggcatttgagaaggcttgggaagaagcttgttcgtcc
aagggtgaagttgtgcttgaggtgcctcaaggaaaacgctatcaactcaagcctattaga
ttttcaggtccctgcaagtctaatcttacaatccagatatatggaagcatggaagcatct
gatgatatgtcagactacaaggaagatacaaggcactggcttatctttgatagtattaat
aatctgttaattgaaggtggtggaactggaaaaattaatggtaatgggaagatatggtgg
caaaactcttgcaaaatcaataaaactcttccatgcaaggatgcaccaacggctctcacc
ttctacaatagcaaaaacttgaaagttcaaaacttgaacatccaagatgcacaacaaatt
catgtttcttttgaaaaatgcaacggtgttcaagcttctggtcttgcggtggcagcccca
gagagcagccccaacaccgatgggattcatatcactcgtagtcaaaacatatggatcaca
aattctgtcataggaacaggtgacgattgtatctccattgtaagtggatccaaaaatgtg
caagccatggacataacttgtggccctggtcatggaatcagtattgggagcttgggatct
aaaagttcaaaggcttatgtctcgggtgtgactgtggatggagctaagctttctggaacc
gcaaatggtgtgaggatcaagacatggcagggagggttaggaagtgcaagcaacatctta
ttccagaacattgaaatgaataacgtcagcaaccccatcatcatagaccaaaactattgt
gaccaagataaaccatgcaaagaacagagctctgcagttaaagtgaaagatgtggtgtat
aagaacatcaatgggactagtgcttctgaagtagcaatcaaatttgattgcagcaagact
catccttgccaagaaattttgctgcaaaatgttaagttacaggaacaaggagatagaact
gccaaagctatctgcaacaatgttaaattgactgaaaagggaactgttttcccacaatgt
taa
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